Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_B17
(729 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23396|RS3_HUMAN 40S ribosomal protein S3 315 8e-86
sp|P02350|RS3A_XENLA 40S ribosomal protein S3-A (S1A) 314 2e-85
sp|P62909|RS3_RAT 40S ribosomal protein S3 >gi|51703309|sp|... 313 2e-85
sp|P79891|RS3_AMBME 40S ribosomal protein S3 313 3e-85
sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3 312 7e-85
sp|P47835|RS3B_XENLA 40S ribosomal protein S3B (S1B) 311 1e-84
sp|Q06559|RS3_DROME 40S ribosomal protein S3 298 1e-80
sp|P48153|RS3_MANSE 40S ribosomal protein S3 297 2e-80
sp|P48152|RS3_CAEEL 40S ribosomal protein S3 293 4e-79
sp|O60128|RS3_SCHPO 40S ribosomal protein S3 267 2e-71
>sp|P23396|RS3_HUMAN 40S ribosomal protein S3
Length = 243
Score = 315 bits (807), Expect = 8e-86
Identities = 160/224 (71%), Positives = 185/224 (82%)
Frame = +3
Query: 15 KISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKG 194
+ISK RK V DG+FKAEL+ F +ELAEDGYS VE+R P R EIII AT+TQNVLGEKG
Sbjct: 4 QISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKG 63
Query: 195 RRVKELTAVLQKRFDLNEKEVVIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVL 374
RR++ELTAV+QKRF E V ++ EK+ RGL A+AQAESLRYKLLGG+AVR+ACYGVL
Sbjct: 64 RRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
Query: 375 RFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLG 554
RFI+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV Y+D AVRHV LRQGVLG
Sbjct: 124 RFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLG 183
Query: 555 IKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 686
IKVKIM D TGK+GPK+PLPD +SI++PK E+ TP SE K
Sbjct: 184 IKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQK 227
>sp|P02350|RS3A_XENLA 40S ribosomal protein S3-A (S1A)
Length = 246
Score = 314 bits (804), Expect = 2e-85
Identities = 159/224 (70%), Positives = 185/224 (82%)
Frame = +3
Query: 15 KISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKG 194
+ISK RK V DG+FKAEL+ F +ELAEDGYS VE+R P R EIII AT+TQNVLGEKG
Sbjct: 4 QISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKG 63
Query: 195 RRVKELTAVLQKRFDLNEKEVVIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVL 374
RR++ELTAV+QKRF E V ++ EK+ RGL A+AQAESLRYKLLGG+AVR+ACYGVL
Sbjct: 64 RRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
Query: 375 RFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLG 554
RFI+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV Y+D AVRHV LRQGVLG
Sbjct: 124 RFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLG 183
Query: 555 IKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 686
IKVKIM D +GK+GPK+PLPD +SI++PK E+ TP SE K
Sbjct: 184 IKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIVPTTPISEQK 227
>sp|P62909|RS3_RAT 40S ribosomal protein S3
sp|P62908|RS3_MOUSE 40S ribosomal protein S3
Length = 243
Score = 313 bits (803), Expect = 2e-85
Identities = 159/224 (70%), Positives = 185/224 (82%)
Frame = +3
Query: 15 KISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKG 194
+ISK RK V DG+FKAEL+ F +ELAEDGYS VE+R P R EIII AT+TQNVLGEKG
Sbjct: 4 QISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKG 63
Query: 195 RRVKELTAVLQKRFDLNEKEVVIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVL 374
RR++ELTAV+QKRF E V ++ EK+ RGL A+AQAESLRYKLLGG+AVR+ACYGVL
Sbjct: 64 RRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
Query: 375 RFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLG 554
RFI+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV Y+D AVRHV LRQGVLG
Sbjct: 124 RFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLG 183
Query: 555 IKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 686
IKVKIM D +GK+GPK+PLPD +SI++PK E+ TP SE K
Sbjct: 184 IKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQK 227
>sp|P79891|RS3_AMBME 40S ribosomal protein S3
Length = 253
Score = 313 bits (802), Expect = 3e-85
Identities = 158/224 (70%), Positives = 186/224 (83%)
Frame = +3
Query: 15 KISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKG 194
+ISK RK V DG+FKAEL+ F +ELAEDGYS VE+R P R EIII AT+TQNVLGEKG
Sbjct: 4 QISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKG 63
Query: 195 RRVKELTAVLQKRFDLNEKEVVIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVL 374
RR++ELTAV+QKRF E V ++ EK+ RGL A+AQAESLRYKLLGG+AVR+ACYGVL
Sbjct: 64 RRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
Query: 375 RFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLG 554
RFI+ESG+KG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV Y+D AVRHV LRQGVLG
Sbjct: 124 RFIMESGSKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLG 183
Query: 555 IKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 686
IKVKIM + D +GK+GPK+PLPD +SI++PK E+ TP SE K
Sbjct: 184 IKVKIMLAWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQK 227
>sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3
Length = 245
Score = 312 bits (799), Expect = 7e-85
Identities = 158/224 (70%), Positives = 184/224 (82%)
Frame = +3
Query: 15 KISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKG 194
+ISK RK V DG+FKAEL+ F +ELAEDGYS VE+R P R EIII AT+TQNVLGEKG
Sbjct: 4 QISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKG 63
Query: 195 RRVKELTAVLQKRFDLNEKEVVIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVL 374
RR++ELTAV+QKRF V ++ EK+ RGL A+AQAESLRYKLLGG+AVR+ACYGVL
Sbjct: 64 RRIRELTAVVQKRFGFPRGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
Query: 375 RFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLG 554
RFI+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV Y+D AVRHV LRQGVLG
Sbjct: 124 RFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLG 183
Query: 555 IKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 686
IKVKIM D +GK+GPK+PLPD +SI++PK E+ TP SE K
Sbjct: 184 IKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEILPTTPVSEQK 227
>sp|P47835|RS3B_XENLA 40S ribosomal protein S3B (S1B)
Length = 246
Score = 311 bits (797), Expect = 1e-84
Identities = 157/224 (70%), Positives = 185/224 (82%)
Frame = +3
Query: 15 KISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKG 194
++SK RK V DG+FKAEL+ F +ELAEDGYS VE+R P + EIII AT+TQNVLGEKG
Sbjct: 4 QMSKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTQTEIIILATRTQNVLGEKG 63
Query: 195 RRVKELTAVLQKRFDLNEKEVVIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVL 374
RR++ELTAV+QKRF E V ++ EK+ RGL A+AQAESLRYKLLGG+AVR+ACYGVL
Sbjct: 64 RRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
Query: 375 RFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLG 554
RFI+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV Y+D AVRHV LRQGVLG
Sbjct: 124 RFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLG 183
Query: 555 IKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 686
IKVKIM D +GK+GPK+PLPD +SI++PK E+ TP SE K
Sbjct: 184 IKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIVPTTPISEQK 227
>sp|Q06559|RS3_DROME 40S ribosomal protein S3
Length = 246
Score = 298 bits (762), Expect = 1e-80
Identities = 147/223 (65%), Positives = 180/223 (80%)
Frame = +3
Query: 18 ISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKGR 197
ISK RK V DG+FKAEL+ F +ELAEDGYS VE+R P+R EIII ATKTQ VLGEKGR
Sbjct: 7 ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGR 66
Query: 198 RVKELTAVLQKRFDLNEKEVVIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVLR 377
R++ELTA++QKRF+ + ++ EK+ RGL A+AQAESLRYKL GG+AVR+ACYGVLR
Sbjct: 67 RIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLR 126
Query: 378 FILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGI 557
+I+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+P +Y++ A RHV LRQGVLGI
Sbjct: 127 YIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGI 186
Query: 558 KVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 686
KVK+M +D K+GPK+PLPD +S+++PK E TP +E K
Sbjct: 187 KVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYK 229
>sp|P48153|RS3_MANSE 40S ribosomal protein S3
Length = 243
Score = 297 bits (760), Expect = 2e-80
Identities = 150/227 (66%), Positives = 182/227 (80%)
Frame = +3
Query: 12 NKISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEK 191
N ISK RK V DGVFKAEL+ F +ELAEDGYS VE+R P R EIII AT+TQ+VLGEK
Sbjct: 4 NNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEK 63
Query: 192 GRRVKELTAVLQKRFDLNEKEVVIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGV 371
GRR++ELT+V+QKRF++ E+ V ++ EK+ RGL A+AQAESLRYKL+GG+AVR+ACYGV
Sbjct: 64 GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 123
Query: 372 LRFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVL 551
LRFI+ESGA+G EV+VSGKLRGQRAKSMKF DGLMIHSG+P +Y++ A RHV LRQGVL
Sbjct: 124 LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 183
Query: 552 GIKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENKPL 692
GIKVKIM D GK GPK+P PD I + +PK E + P S+ + L
Sbjct: 184 GIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPAPLEPTSDIRSL 230
>sp|P48152|RS3_CAEEL 40S ribosomal protein S3
Length = 247
Score = 293 bits (749), Expect = 4e-79
Identities = 146/226 (64%), Positives = 182/226 (80%)
Frame = +3
Query: 9 SNKISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGE 188
+ ++K +K V G+FKAEL+ F KELAEDGYS VE+R+ P R E+II AT+TQNVLGE
Sbjct: 4 NQNVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGE 63
Query: 189 KGRRVKELTAVLQKRFDLNEKEVVIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYG 368
+GRR+KELT+V+QKRF E V ++ EK+ NRGL AVAQ ESLRYKL+GG+AVR+ACYG
Sbjct: 64 RGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYG 123
Query: 369 VLRFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGV 548
VLRFI+ESGA+G EVIVSGKLRGQRAK+MKF DGLMIHSG+PV +YI AVRHV+LRQGV
Sbjct: 124 VLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGV 183
Query: 549 LGIKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 686
+GIKVKIM +D G+ GP+ LPD + I++P+ EV P S++K
Sbjct: 184 IGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEPHSQHK 229
>sp|O60128|RS3_SCHPO 40S ribosomal protein S3
Length = 249
Score = 267 bits (683), Expect = 2e-71
Identities = 136/218 (62%), Positives = 167/218 (76%)
Frame = +3
Query: 18 ISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKGR 197
ISK RK V DGVF AEL+ FF +EL+E+GYS E+R P+R EIII AT TQ+VLGEKGR
Sbjct: 7 ISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGR 66
Query: 198 RVKELTAVLQKRFDLNEKEVVIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVLR 377
R++ELTA++QKRF E V ++ EK+ NRGL AVAQ ESLRYKLL G+AVR+A YGVLR
Sbjct: 67 RIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLR 126
Query: 378 FILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGI 557
+++E+GAKG EV++SGKLR RAKSMKF+DG MIHSG P +++ID A RHV LRQGVLG+
Sbjct: 127 YVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGV 186
Query: 558 KVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTP 671
KVKIM T + K+ LPD + +L PK E PI P
Sbjct: 187 KVKIMLPEPKTRQ---KKSLPDIVVVLDPKEEEPITKP 221
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,254,829
Number of Sequences: 369166
Number of extensions: 1344820
Number of successful extensions: 3949
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3855
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6486082400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)