Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_N11
(554 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23396|RS3_HUMAN 40S ribosomal protein S3 242 4e-64
sp|P47835|RS3B_XENLA 40S ribosomal protein S3B (S1B) 241 9e-64
sp|P02350|RS3A_XENLA 40S ribosomal protein S3-A (S1A) 241 9e-64
sp|P62909|RS3_RAT 40S ribosomal protein S3 >gi|51703309|sp|... 241 1e-63
sp|P79891|RS3_AMBME 40S ribosomal protein S3 240 1e-63
sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3 239 3e-63
sp|Q06559|RS3_DROME 40S ribosomal protein S3 226 4e-59
sp|P48152|RS3_CAEEL 40S ribosomal protein S3 224 8e-59
sp|P48153|RS3_MANSE 40S ribosomal protein S3 224 1e-58
sp|O60128|RS3_SCHPO 40S ribosomal protein S3 202 6e-52
>sp|P23396|RS3_HUMAN 40S ribosomal protein S3
Length = 243
Score = 242 bits (618), Expect = 4e-64
Identities = 122/169 (72%), Positives = 142/169 (84%)
Frame = +1
Query: 1 LG*KGRRVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKA 180
LG KGRR++ELTAV+QKRF E V+++ EK+ RGL A+AQAESLRYKLLGG+AVR+A
Sbjct: 59 LGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRA 118
Query: 181 CYGVLRFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELR 360
CYGVLRFI+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV Y+D AVRHV LR
Sbjct: 119 CYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLR 178
Query: 361 QGVLGIKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 507
QGVLGIKVKIM D TGK+GPK+PLPD +SI++PK E+ TP SE K
Sbjct: 179 QGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQK 227
>sp|P47835|RS3B_XENLA 40S ribosomal protein S3B (S1B)
Length = 246
Score = 241 bits (615), Expect = 9e-64
Identities = 121/169 (71%), Positives = 142/169 (84%)
Frame = +1
Query: 1 LG*KGRRVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKA 180
LG KGRR++ELTAV+QKRF E V+++ EK+ RGL A+AQAESLRYKLLGG+AVR+A
Sbjct: 59 LGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRA 118
Query: 181 CYGVLRFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELR 360
CYGVLRFI+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV Y+D AVRHV LR
Sbjct: 119 CYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLR 178
Query: 361 QGVLGIKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 507
QGVLGIKVKIM D +GK+GPK+PLPD +SI++PK E+ TP SE K
Sbjct: 179 QGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIVPTTPISEQK 227
>sp|P02350|RS3A_XENLA 40S ribosomal protein S3-A (S1A)
Length = 246
Score = 241 bits (615), Expect = 9e-64
Identities = 121/169 (71%), Positives = 142/169 (84%)
Frame = +1
Query: 1 LG*KGRRVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKA 180
LG KGRR++ELTAV+QKRF E V+++ EK+ RGL A+AQAESLRYKLLGG+AVR+A
Sbjct: 59 LGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRA 118
Query: 181 CYGVLRFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELR 360
CYGVLRFI+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV Y+D AVRHV LR
Sbjct: 119 CYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLR 178
Query: 361 QGVLGIKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 507
QGVLGIKVKIM D +GK+GPK+PLPD +SI++PK E+ TP SE K
Sbjct: 179 QGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIVPTTPISEQK 227
>sp|P62909|RS3_RAT 40S ribosomal protein S3
sp|P62908|RS3_MOUSE 40S ribosomal protein S3
Length = 243
Score = 241 bits (614), Expect = 1e-63
Identities = 121/169 (71%), Positives = 142/169 (84%)
Frame = +1
Query: 1 LG*KGRRVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKA 180
LG KGRR++ELTAV+QKRF E V+++ EK+ RGL A+AQAESLRYKLLGG+AVR+A
Sbjct: 59 LGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRA 118
Query: 181 CYGVLRFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELR 360
CYGVLRFI+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV Y+D AVRHV LR
Sbjct: 119 CYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLR 178
Query: 361 QGVLGIKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 507
QGVLGIKVKIM D +GK+GPK+PLPD +SI++PK E+ TP SE K
Sbjct: 179 QGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQK 227
>sp|P79891|RS3_AMBME 40S ribosomal protein S3
Length = 253
Score = 240 bits (613), Expect = 1e-63
Identities = 120/169 (71%), Positives = 143/169 (84%)
Frame = +1
Query: 1 LG*KGRRVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKA 180
LG KGRR++ELTAV+QKRF E V+++ EK+ RGL A+AQAESLRYKLLGG+AVR+A
Sbjct: 59 LGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRA 118
Query: 181 CYGVLRFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELR 360
CYGVLRFI+ESG+KG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV Y+D AVRHV LR
Sbjct: 119 CYGVLRFIMESGSKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLR 178
Query: 361 QGVLGIKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 507
QGVLGIKVKIM + D +GK+GPK+PLPD +SI++PK E+ TP SE K
Sbjct: 179 QGVLGIKVKIMLAWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQK 227
>sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3
Length = 245
Score = 239 bits (610), Expect = 3e-63
Identities = 120/169 (71%), Positives = 141/169 (83%)
Frame = +1
Query: 1 LG*KGRRVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKA 180
LG KGRR++ELTAV+QKRF V+++ EK+ RGL A+AQAESLRYKLLGG+AVR+A
Sbjct: 59 LGEKGRRIRELTAVVQKRFGFPRGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRA 118
Query: 181 CYGVLRFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELR 360
CYGVLRFI+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV Y+D AVRHV LR
Sbjct: 119 CYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLR 178
Query: 361 QGVLGIKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 507
QGVLGIKVKIM D +GK+GPK+PLPD +SI++PK E+ TP SE K
Sbjct: 179 QGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEILPTTPVSEQK 227
>sp|Q06559|RS3_DROME 40S ribosomal protein S3
Length = 246
Score = 226 bits (575), Expect = 4e-59
Identities = 109/169 (64%), Positives = 138/169 (81%)
Frame = +1
Query: 1 LG*KGRRVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKA 180
LG KGRR++ELTA++QKRF+ ++++ EK+ RGL A+AQAESLRYKL GG+AVR+A
Sbjct: 61 LGEKGRRIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRA 120
Query: 181 CYGVLRFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELR 360
CYGVLR+I+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+P +Y++ A RHV LR
Sbjct: 121 CYGVLRYIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLR 180
Query: 361 QGVLGIKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 507
QGVLGIKVK+M +D K+GPK+PLPD +S+++PK E TP +E K
Sbjct: 181 QGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYK 229
>sp|P48152|RS3_CAEEL 40S ribosomal protein S3
Length = 247
Score = 224 bits (572), Expect = 8e-59
Identities = 112/169 (66%), Positives = 139/169 (82%)
Frame = +1
Query: 1 LG*KGRRVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKA 180
LG +GRR+KELT+V+QKRF E V+++ EK+ NRGL AVAQ ESLRYKL+GG+AVR+A
Sbjct: 61 LGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRA 120
Query: 181 CYGVLRFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELR 360
CYGVLRFI+ESGA+G EVIVSGKLRGQRAK+MKF DGLMIHSG+PV +YI AVRHV+LR
Sbjct: 121 CYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLR 180
Query: 361 QGVLGIKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 507
QGV+GIKVKIM +D G+ GP+ LPD + I++P+ EV P S++K
Sbjct: 181 QGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEPHSQHK 229
>sp|P48153|RS3_MANSE 40S ribosomal protein S3
Length = 243
Score = 224 bits (570), Expect = 1e-58
Identities = 111/171 (64%), Positives = 139/171 (81%)
Frame = +1
Query: 1 LG*KGRRVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKA 180
LG KGRR++ELT+V+QKRF++ E+ V+++ EK+ RGL A+AQAESLRYKL+GG+AVR+A
Sbjct: 60 LGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRA 119
Query: 181 CYGVLRFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELR 360
CYGVLRFI+ESGA+G EV+VSGKLRGQRAKSMKF DGLMIHSG+P +Y++ A RHV LR
Sbjct: 120 CYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 179
Query: 361 QGVLGIKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENKPL 513
QGVLGIKVKIM D GK GPK+P PD I + +PK E + P S+ + L
Sbjct: 180 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPAPLEPTSDIRSL 230
>sp|O60128|RS3_SCHPO 40S ribosomal protein S3
Length = 249
Score = 202 bits (513), Expect = 6e-52
Identities = 101/164 (61%), Positives = 126/164 (76%)
Frame = +1
Query: 1 LG*KGRRVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKA 180
LG KGRR++ELTA++QKRF E V+++ EK+ NRGL AVAQ ESLRYKLL G+AVR+A
Sbjct: 61 LGEKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRA 120
Query: 181 CYGVLRFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELR 360
YGVLR+++E+GAKG EV++SGKLR RAKSMKF+DG MIHSG P +++ID A RHV LR
Sbjct: 121 AYGVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLR 180
Query: 361 QGVLGIKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTP 492
QGVLG+KVKIM T + K+ LPD + +L PK E PI P
Sbjct: 181 QGVLGVKVKIMLPEPKTRQ---KKSLPDIVVVLDPKEEEPITKP 221
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,816,942
Number of Sequences: 369166
Number of extensions: 994388
Number of successful extensions: 3087
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3041
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3931403200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)