Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_E21
(589 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23396|RS3_HUMAN 40S ribosomal protein S3 262 5e-70
sp|P47835|RS3B_XENLA 40S ribosomal protein S3B (S1B) 261 1e-69
sp|P02350|RS3A_XENLA 40S ribosomal protein S3-A (S1A) 261 1e-69
sp|P62909|RS3_RAT 40S ribosomal protein S3 >gi|51703309|sp|... 260 2e-69
sp|P79891|RS3_AMBME 40S ribosomal protein S3 260 2e-69
sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3 259 5e-69
sp|Q06559|RS3_DROME 40S ribosomal protein S3 244 9e-65
sp|P48152|RS3_CAEEL 40S ribosomal protein S3 244 1e-64
sp|P48153|RS3_MANSE 40S ribosomal protein S3 242 6e-64
sp|O60128|RS3_SCHPO 40S ribosomal protein S3 219 5e-57
>sp|P23396|RS3_HUMAN 40S ribosomal protein S3
Length = 243
Score = 262 bits (669), Expect = 5e-70
Identities = 133/181 (73%), Positives = 153/181 (84%)
Frame = +2
Query: 2 EIIISATKTQNVLGEKGRRVKELTAVLQKRFDLNEKEVVIFCEKMVNRGLSAVAQAESLR 181
EIII AT+TQNVLGEKGRR++ELTAV+QKRF E V ++ EK+ RGL A+AQAESLR
Sbjct: 47 EIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLR 106
Query: 182 YKLLGGVAVRKACYGVLRFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIE 361
YKLLGG+AVR+ACYGVLRFI+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV
Sbjct: 107 YKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNY 166
Query: 362 YIDVAVRHVELRQGVLGIKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSEN 541
Y+D AVRHV LRQGVLGIKVKIM D TGK+GPK+PLPD +SI++PK E+ TP SE
Sbjct: 167 YVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQ 226
Query: 542 K 544
K
Sbjct: 227 K 227
>sp|P47835|RS3B_XENLA 40S ribosomal protein S3B (S1B)
Length = 246
Score = 261 bits (666), Expect = 1e-69
Identities = 132/181 (72%), Positives = 153/181 (84%)
Frame = +2
Query: 2 EIIISATKTQNVLGEKGRRVKELTAVLQKRFDLNEKEVVIFCEKMVNRGLSAVAQAESLR 181
EIII AT+TQNVLGEKGRR++ELTAV+QKRF E V ++ EK+ RGL A+AQAESLR
Sbjct: 47 EIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLR 106
Query: 182 YKLLGGVAVRKACYGVLRFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIE 361
YKLLGG+AVR+ACYGVLRFI+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV
Sbjct: 107 YKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNY 166
Query: 362 YIDVAVRHVELRQGVLGIKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSEN 541
Y+D AVRHV LRQGVLGIKVKIM D +GK+GPK+PLPD +SI++PK E+ TP SE
Sbjct: 167 YVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIVPTTPISEQ 226
Query: 542 K 544
K
Sbjct: 227 K 227
>sp|P02350|RS3A_XENLA 40S ribosomal protein S3-A (S1A)
Length = 246
Score = 261 bits (666), Expect = 1e-69
Identities = 132/181 (72%), Positives = 153/181 (84%)
Frame = +2
Query: 2 EIIISATKTQNVLGEKGRRVKELTAVLQKRFDLNEKEVVIFCEKMVNRGLSAVAQAESLR 181
EIII AT+TQNVLGEKGRR++ELTAV+QKRF E V ++ EK+ RGL A+AQAESLR
Sbjct: 47 EIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLR 106
Query: 182 YKLLGGVAVRKACYGVLRFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIE 361
YKLLGG+AVR+ACYGVLRFI+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV
Sbjct: 107 YKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNY 166
Query: 362 YIDVAVRHVELRQGVLGIKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSEN 541
Y+D AVRHV LRQGVLGIKVKIM D +GK+GPK+PLPD +SI++PK E+ TP SE
Sbjct: 167 YVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIVPTTPISEQ 226
Query: 542 K 544
K
Sbjct: 227 K 227
>sp|P62909|RS3_RAT 40S ribosomal protein S3
sp|P62908|RS3_MOUSE 40S ribosomal protein S3
Length = 243
Score = 260 bits (665), Expect = 2e-69
Identities = 132/181 (72%), Positives = 153/181 (84%)
Frame = +2
Query: 2 EIIISATKTQNVLGEKGRRVKELTAVLQKRFDLNEKEVVIFCEKMVNRGLSAVAQAESLR 181
EIII AT+TQNVLGEKGRR++ELTAV+QKRF E V ++ EK+ RGL A+AQAESLR
Sbjct: 47 EIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLR 106
Query: 182 YKLLGGVAVRKACYGVLRFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIE 361
YKLLGG+AVR+ACYGVLRFI+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV
Sbjct: 107 YKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNY 166
Query: 362 YIDVAVRHVELRQGVLGIKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSEN 541
Y+D AVRHV LRQGVLGIKVKIM D +GK+GPK+PLPD +SI++PK E+ TP SE
Sbjct: 167 YVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQ 226
Query: 542 K 544
K
Sbjct: 227 K 227
>sp|P79891|RS3_AMBME 40S ribosomal protein S3
Length = 253
Score = 260 bits (664), Expect = 2e-69
Identities = 131/181 (72%), Positives = 154/181 (85%)
Frame = +2
Query: 2 EIIISATKTQNVLGEKGRRVKELTAVLQKRFDLNEKEVVIFCEKMVNRGLSAVAQAESLR 181
EIII AT+TQNVLGEKGRR++ELTAV+QKRF E V ++ EK+ RGL A+AQAESLR
Sbjct: 47 EIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLR 106
Query: 182 YKLLGGVAVRKACYGVLRFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIE 361
YKLLGG+AVR+ACYGVLRFI+ESG+KG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV
Sbjct: 107 YKLLGGLAVRRACYGVLRFIMESGSKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNY 166
Query: 362 YIDVAVRHVELRQGVLGIKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSEN 541
Y+D AVRHV LRQGVLGIKVKIM + D +GK+GPK+PLPD +SI++PK E+ TP SE
Sbjct: 167 YVDTAVRHVLLRQGVLGIKVKIMLAWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQ 226
Query: 542 K 544
K
Sbjct: 227 K 227
>sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3
Length = 245
Score = 259 bits (661), Expect = 5e-69
Identities = 131/181 (72%), Positives = 152/181 (83%)
Frame = +2
Query: 2 EIIISATKTQNVLGEKGRRVKELTAVLQKRFDLNEKEVVIFCEKMVNRGLSAVAQAESLR 181
EIII AT+TQNVLGEKGRR++ELTAV+QKRF V ++ EK+ RGL A+AQAESLR
Sbjct: 47 EIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPRGSVELYAEKVATRGLCAIAQAESLR 106
Query: 182 YKLLGGVAVRKACYGVLRFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIE 361
YKLLGG+AVR+ACYGVLRFI+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV
Sbjct: 107 YKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNY 166
Query: 362 YIDVAVRHVELRQGVLGIKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSEN 541
Y+D AVRHV LRQGVLGIKVKIM D +GK+GPK+PLPD +SI++PK E+ TP SE
Sbjct: 167 YVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEILPTTPVSEQ 226
Query: 542 K 544
K
Sbjct: 227 K 227
>sp|Q06559|RS3_DROME 40S ribosomal protein S3
Length = 246
Score = 244 bits (624), Expect = 9e-65
Identities = 120/181 (66%), Positives = 148/181 (81%)
Frame = +2
Query: 2 EIIISATKTQNVLGEKGRRVKELTAVLQKRFDLNEKEVVIFCEKMVNRGLSAVAQAESLR 181
EIII ATKTQ VLGEKGRR++ELTA++QKRF+ + ++ EK+ RGL A+AQAESLR
Sbjct: 49 EIIIMATKTQQVLGEKGRRIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLR 108
Query: 182 YKLLGGVAVRKACYGVLRFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIE 361
YKL GG+AVR+ACYGVLR+I+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+P +
Sbjct: 109 YKLTGGLAVRRACYGVLRYIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCND 168
Query: 362 YIDVAVRHVELRQGVLGIKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSEN 541
Y++ A RHV LRQGVLGIKVK+M +D K+GPK+PLPD +S+++PK E TP +E
Sbjct: 169 YVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEY 228
Query: 542 K 544
K
Sbjct: 229 K 229
>sp|P48152|RS3_CAEEL 40S ribosomal protein S3
Length = 247
Score = 244 bits (623), Expect = 1e-64
Identities = 122/181 (67%), Positives = 150/181 (82%)
Frame = +2
Query: 2 EIIISATKTQNVLGEKGRRVKELTAVLQKRFDLNEKEVVIFCEKMVNRGLSAVAQAESLR 181
E+II AT+TQNVLGE+GRR+KELT+V+QKRF E V ++ EK+ NRGL AVAQ ESLR
Sbjct: 49 EVIIMATRTQNVLGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLR 108
Query: 182 YKLLGGVAVRKACYGVLRFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIE 361
YKL+GG+AVR+ACYGVLRFI+ESGA+G EVIVSGKLRGQRAK+MKF DGLMIHSG+PV +
Sbjct: 109 YKLVGGLAVRRACYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVND 168
Query: 362 YIDVAVRHVELRQGVLGIKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSEN 541
YI AVRHV+LRQGV+GIKVKIM +D G+ GP+ LPD + I++P+ EV P S++
Sbjct: 169 YIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEPHSQH 228
Query: 542 K 544
K
Sbjct: 229 K 229
>sp|P48153|RS3_MANSE 40S ribosomal protein S3
Length = 243
Score = 242 bits (617), Expect = 6e-64
Identities = 121/183 (66%), Positives = 150/183 (81%)
Frame = +2
Query: 2 EIIISATKTQNVLGEKGRRVKELTAVLQKRFDLNEKEVVIFCEKMVNRGLSAVAQAESLR 181
EIII AT+TQ+VLGEKGRR++ELT+V+QKRF++ E+ V ++ EK+ RGL A+AQAESLR
Sbjct: 48 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLR 107
Query: 182 YKLLGGVAVRKACYGVLRFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIE 361
YKL+GG+AVR+ACYGVLRFI+ESGA+G EV+VSGKLRGQRAKSMKF DGLMIHSG+P +
Sbjct: 108 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCND 167
Query: 362 YIDVAVRHVELRQGVLGIKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSEN 541
Y++ A RHV LRQGVLGIKVKIM D GK GPK+P PD I + +PK E + P S+
Sbjct: 168 YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPAPLEPTSDI 227
Query: 542 KPL 550
+ L
Sbjct: 228 RSL 230
>sp|O60128|RS3_SCHPO 40S ribosomal protein S3
Length = 249
Score = 219 bits (557), Expect = 5e-57
Identities = 111/176 (63%), Positives = 136/176 (77%)
Frame = +2
Query: 2 EIIISATKTQNVLGEKGRRVKELTAVLQKRFDLNEKEVVIFCEKMVNRGLSAVAQAESLR 181
EIII AT TQ+VLGEKGRR++ELTA++QKRF E V ++ EK+ NRGL AVAQ ESLR
Sbjct: 49 EIIIRATHTQDVLGEKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLR 108
Query: 182 YKLLGGVAVRKACYGVLRFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIE 361
YKLL G+AVR+A YGVLR+++E+GAKG EV++SGKLR RAKSMKF+DG MIHSG P ++
Sbjct: 109 YKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVD 168
Query: 362 YIDVAVRHVELRQGVLGIKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTP 529
+ID A RHV LRQGVLG+KVKIM T + K+ LPD + +L PK E PI P
Sbjct: 169 FIDSATRHVLLRQGVLGVKVKIMLPEPKTRQ---KKSLPDIVVVLDPKEEEPITKP 221
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,266,431
Number of Sequences: 369166
Number of extensions: 1026492
Number of successful extensions: 3256
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3200
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4406202450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)