Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_F02
(722 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23396|RS3_HUMAN 40S ribosomal protein S3 317 3e-86
sp|P02350|RS3A_XENLA 40S ribosomal protein S3-A (S1A) 315 6e-86
sp|P62909|RS3_RAT 40S ribosomal protein S3 >gi|51703309|sp|... 315 8e-86
sp|P79891|RS3_AMBME 40S ribosomal protein S3 315 1e-85
sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3 313 2e-85
sp|P47835|RS3B_XENLA 40S ribosomal protein S3B (S1B) 313 4e-85
sp|Q06559|RS3_DROME 40S ribosomal protein S3 299 4e-81
sp|P48153|RS3_MANSE 40S ribosomal protein S3 298 8e-81
sp|P48152|RS3_CAEEL 40S ribosomal protein S3 294 2e-79
sp|O60128|RS3_SCHPO 40S ribosomal protein S3 269 6e-72
>sp|P23396|RS3_HUMAN 40S ribosomal protein S3
Length = 243
Score = 317 bits (811), Expect = 3e-86
Identities = 160/224 (71%), Positives = 186/224 (83%)
Frame = +3
Query: 6 KISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKG 185
+ISK RK V DG+FKAEL+ F +ELAEDGYS VE+R P R EIII AT+TQNVLGEKG
Sbjct: 4 QISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKG 63
Query: 186 RRVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVL 365
RR++ELTAV+QKRF E V+++ EK+ RGL A+AQAESLRYKLLGG+AVR+ACYGVL
Sbjct: 64 RRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
Query: 366 RFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLG 545
RFI+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV Y+D AVRHV LRQGVLG
Sbjct: 124 RFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLG 183
Query: 546 IKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 677
IKVKIM D TGK+GPK+PLPD +SI++PK E+ TP SE K
Sbjct: 184 IKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQK 227
>sp|P02350|RS3A_XENLA 40S ribosomal protein S3-A (S1A)
Length = 246
Score = 315 bits (808), Expect = 6e-86
Identities = 159/224 (70%), Positives = 186/224 (83%)
Frame = +3
Query: 6 KISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKG 185
+ISK RK V DG+FKAEL+ F +ELAEDGYS VE+R P R EIII AT+TQNVLGEKG
Sbjct: 4 QISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKG 63
Query: 186 RRVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVL 365
RR++ELTAV+QKRF E V+++ EK+ RGL A+AQAESLRYKLLGG+AVR+ACYGVL
Sbjct: 64 RRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
Query: 366 RFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLG 545
RFI+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV Y+D AVRHV LRQGVLG
Sbjct: 124 RFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLG 183
Query: 546 IKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 677
IKVKIM D +GK+GPK+PLPD +SI++PK E+ TP SE K
Sbjct: 184 IKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIVPTTPISEQK 227
>sp|P62909|RS3_RAT 40S ribosomal protein S3
sp|P62908|RS3_MOUSE 40S ribosomal protein S3
Length = 243
Score = 315 bits (807), Expect = 8e-86
Identities = 159/224 (70%), Positives = 186/224 (83%)
Frame = +3
Query: 6 KISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKG 185
+ISK RK V DG+FKAEL+ F +ELAEDGYS VE+R P R EIII AT+TQNVLGEKG
Sbjct: 4 QISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKG 63
Query: 186 RRVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVL 365
RR++ELTAV+QKRF E V+++ EK+ RGL A+AQAESLRYKLLGG+AVR+ACYGVL
Sbjct: 64 RRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
Query: 366 RFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLG 545
RFI+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV Y+D AVRHV LRQGVLG
Sbjct: 124 RFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLG 183
Query: 546 IKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 677
IKVKIM D +GK+GPK+PLPD +SI++PK E+ TP SE K
Sbjct: 184 IKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQK 227
>sp|P79891|RS3_AMBME 40S ribosomal protein S3
Length = 253
Score = 315 bits (806), Expect = 1e-85
Identities = 158/224 (70%), Positives = 187/224 (83%)
Frame = +3
Query: 6 KISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKG 185
+ISK RK V DG+FKAEL+ F +ELAEDGYS VE+R P R EIII AT+TQNVLGEKG
Sbjct: 4 QISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKG 63
Query: 186 RRVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVL 365
RR++ELTAV+QKRF E V+++ EK+ RGL A+AQAESLRYKLLGG+AVR+ACYGVL
Sbjct: 64 RRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
Query: 366 RFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLG 545
RFI+ESG+KG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV Y+D AVRHV LRQGVLG
Sbjct: 124 RFIMESGSKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLG 183
Query: 546 IKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 677
IKVKIM + D +GK+GPK+PLPD +SI++PK E+ TP SE K
Sbjct: 184 IKVKIMLAWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQK 227
>sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3
Length = 245
Score = 313 bits (803), Expect = 2e-85
Identities = 158/224 (70%), Positives = 185/224 (82%)
Frame = +3
Query: 6 KISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKG 185
+ISK RK V DG+FKAEL+ F +ELAEDGYS VE+R P R EIII AT+TQNVLGEKG
Sbjct: 4 QISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKG 63
Query: 186 RRVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVL 365
RR++ELTAV+QKRF V+++ EK+ RGL A+AQAESLRYKLLGG+AVR+ACYGVL
Sbjct: 64 RRIRELTAVVQKRFGFPRGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
Query: 366 RFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLG 545
RFI+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV Y+D AVRHV LRQGVLG
Sbjct: 124 RFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLG 183
Query: 546 IKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 677
IKVKIM D +GK+GPK+PLPD +SI++PK E+ TP SE K
Sbjct: 184 IKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEILPTTPVSEQK 227
>sp|P47835|RS3B_XENLA 40S ribosomal protein S3B (S1B)
Length = 246
Score = 313 bits (801), Expect = 4e-85
Identities = 157/224 (70%), Positives = 186/224 (83%)
Frame = +3
Query: 6 KISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKG 185
++SK RK V DG+FKAEL+ F +ELAEDGYS VE+R P + EIII AT+TQNVLGEKG
Sbjct: 4 QMSKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTQTEIIILATRTQNVLGEKG 63
Query: 186 RRVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVL 365
RR++ELTAV+QKRF E V+++ EK+ RGL A+AQAESLRYKLLGG+AVR+ACYGVL
Sbjct: 64 RRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
Query: 366 RFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLG 545
RFI+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV Y+D AVRHV LRQGVLG
Sbjct: 124 RFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLG 183
Query: 546 IKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 677
IKVKIM D +GK+GPK+PLPD +SI++PK E+ TP SE K
Sbjct: 184 IKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIVPTTPISEQK 227
>sp|Q06559|RS3_DROME 40S ribosomal protein S3
Length = 246
Score = 299 bits (766), Expect = 4e-81
Identities = 147/223 (65%), Positives = 181/223 (81%)
Frame = +3
Query: 9 ISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKGR 188
ISK RK V DG+FKAEL+ F +ELAEDGYS VE+R P+R EIII ATKTQ VLGEKGR
Sbjct: 7 ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGR 66
Query: 189 RVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVLR 368
R++ELTA++QKRF+ ++++ EK+ RGL A+AQAESLRYKL GG+AVR+ACYGVLR
Sbjct: 67 RIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLR 126
Query: 369 FILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGI 548
+I+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+P +Y++ A RHV LRQGVLGI
Sbjct: 127 YIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGI 186
Query: 549 KVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 677
KVK+M +D K+GPK+PLPD +S+++PK E TP +E K
Sbjct: 187 KVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYK 229
>sp|P48153|RS3_MANSE 40S ribosomal protein S3
Length = 243
Score = 298 bits (764), Expect = 8e-81
Identities = 150/227 (66%), Positives = 183/227 (80%)
Frame = +3
Query: 3 NKISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEK 182
N ISK RK V DGVFKAEL+ F +ELAEDGYS VE+R P R EIII AT+TQ+VLGEK
Sbjct: 4 NNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEK 63
Query: 183 GRRVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGV 362
GRR++ELT+V+QKRF++ E+ V+++ EK+ RGL A+AQAESLRYKL+GG+AVR+ACYGV
Sbjct: 64 GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 123
Query: 363 LRFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVL 542
LRFI+ESGA+G EV+VSGKLRGQRAKSMKF DGLMIHSG+P +Y++ A RHV LRQGVL
Sbjct: 124 LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 183
Query: 543 GIKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENKPL 683
GIKVKIM D GK GPK+P PD I + +PK E + P S+ + L
Sbjct: 184 GIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPAPLEPTSDIRSL 230
>sp|P48152|RS3_CAEEL 40S ribosomal protein S3
Length = 247
Score = 294 bits (752), Expect = 2e-79
Identities = 146/223 (65%), Positives = 182/223 (81%)
Frame = +3
Query: 9 ISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKGR 188
++K +K V G+FKAEL+ F KELAEDGYS VE+R+ P R E+II AT+TQNVLGE+GR
Sbjct: 7 VTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGR 66
Query: 189 RVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVLR 368
R+KELT+V+QKRF E V+++ EK+ NRGL AVAQ ESLRYKL+GG+AVR+ACYGVLR
Sbjct: 67 RIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLR 126
Query: 369 FILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGI 548
FI+ESGA+G EVIVSGKLRGQRAK+MKF DGLMIHSG+PV +YI AVRHV+LRQGV+GI
Sbjct: 127 FIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGI 186
Query: 549 KVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 677
KVKIM +D G+ GP+ LPD + I++P+ EV P S++K
Sbjct: 187 KVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEPHSQHK 229
>sp|O60128|RS3_SCHPO 40S ribosomal protein S3
Length = 249
Score = 269 bits (687), Expect = 6e-72
Identities = 136/218 (62%), Positives = 168/218 (77%)
Frame = +3
Query: 9 ISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKGR 188
ISK RK V DGVF AEL+ FF +EL+E+GYS E+R P+R EIII AT TQ+VLGEKGR
Sbjct: 7 ISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGR 66
Query: 189 RVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVLR 368
R++ELTA++QKRF E V+++ EK+ NRGL AVAQ ESLRYKLL G+AVR+A YGVLR
Sbjct: 67 RIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLR 126
Query: 369 FILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGI 548
+++E+GAKG EV++SGKLR RAKSMKF+DG MIHSG P +++ID A RHV LRQGVLG+
Sbjct: 127 YVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGV 186
Query: 549 KVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTP 662
KVKIM T + K+ LPD + +L PK E PI P
Sbjct: 187 KVKIMLPEPKTRQ---KKSLPDIVVVLDPKEEEPITKP 221
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,700,078
Number of Sequences: 369166
Number of extensions: 1333243
Number of successful extensions: 4209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4113
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6462248555
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)