Planarian EST Database

DrC_00075

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00075 TTATAAAAATTTATATGATTCTAGATATTTTATCAGATTACGGATGGTATATATTGGTTC TAACCATTATCATATGTTATATCTGGCAAAAAATATCACCTTTGCCTAGGAAAGTTAAAG TCGATAAAAAAGAAATCAATTCAGAACAACAATTCCAGAGAAATGAAGCACTCGACAAAG CTCGTGAGAAAATCGCAAGCAAAACTCAATCTCGATGCTGCTGTGAAATTAGAGAAAATG AAAGAGAAGGAACAAAGAAAGAAGGAAGAGCAAGTGAAAGAATGGGAGAAGCTCAACAAC GGGCTGGGTTATAAATCGAAACAAAAAAGACACGAGGAACCGGACCCTGTCGACCCAGCC TCCTTGGTGCACAAGAAGAAGGAGACATTGAGAGACAGTTACAATCCGTTGATGGGTGAC ACTTGTAGCAGATTCCGACCGGCACGATCGGGTGCAGGGGGATCCTCGGGAGGAGGATGA GGTTAGAGCAGTCTCTGTGGGCAGCACATTTGGTTGCTGCCTGGCGACAGAGACTGATGC TCATATTGTGTGTGCGTGCGTGTGTGTGTGTCACTGAGAGATAGGGGGGATGTGTGTGTG TGCATGTGTATGTGTGTGTCGTGCTCTACCTAATGATGATGACTGTTGAAACGATCGATG AATCGCGGCAATCATTTGAGGCAGACTGAGCTTTTGTTTTATTATTGATTATCGGTATTA TTATCGGGCGCCAATAAAACATTTTATTTTTTCAATTAATTTTCATTGCCAACTCTGTTT AAAAATCGGTTGCTATGGTTACAGTGCAAATTATTCAGGTAATCTGAATGTATCTCATCA ATTATTTTGTAACTTCTTGGTTATGGTTGCTATGGTTACAGTGCAAATTATTCAGGTAAT CTGAATGTATCTCATCAATTATTTTGTAAATTGTTTTAATCGTTTG

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00075
         (946 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9BQE4|SELS_HUMAN  Selenoprotein S (VCP-interacting membr...    32   2.0  
sp|Q8VHV8|SELS_RAT  Selenoprotein S (VCP-interacting membran...    31   4.5  
sp|Q8VWV6|WRK61_ARATH  Probable WRKY transcription factor 61...    30   7.6  
sp|Q09505|YQI4_CAEEL  Hypothetical protein C45G9.4 in chromo...    30   7.6  
sp|Q9BCZ4|SELS_MOUSE  Selenoprotein S (VCP-interacting membr...    30   7.6

>sp|Q9BQE4|SELS_HUMAN Selenoprotein S (VCP-interacting membrane protein)
          Length = 189

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
 Frame = +3

Query: 27  ILSDYGWYILVLTIIICYIWQKISPLPRKVKVDKKE-----INSEQQFQRNEALDKAREK 191
           +L+ YGWYI+   I++  ++QK+S   R ++  + +     +  +   +R EAL  AR K
Sbjct: 29  LLATYGWYIVFSCILLYVVFQKLSARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLK 88

Query: 192 I 194
           +
Sbjct: 89  M 89

>sp|Q8VHV8|SELS_RAT Selenoprotein S (VCP-interacting membrane protein) (Sg2)
          Length = 190

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
 Frame = +3

Query: 27  ILSDYGWYILVLTIIICYIWQKISPLPRKVK---VDKKE--INSEQQFQRNEALDKAR 185
           +L+ YGWYIL   +++  + QK+S   R ++   +D+ E  +  +   +R EAL  AR
Sbjct: 29  LLASYGWYILFSCVLLYIVIQKLSLRLRALRQRQLDQAEAVLEPDVVVKRQEALAAAR 86

>sp|Q8VWV6|WRK61_ARATH Probable WRKY transcription factor 61 (WRKY DNA-binding protein 61)
          Length = 480

 Score = 30.4 bits (67), Expect = 7.6
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 298 NGLGYKSKQKRHEEPDPVDPASLVHKKKETLRD-SYNPLMGDTC 426
           N  G+K+    HE+ D + P +LV K + ++R     P M D C
Sbjct: 151 NSFGFKNDGDDHEDEDEILPQNLVKKTRVSVRSRCETPTMNDGC 194

>sp|Q09505|YQI4_CAEEL Hypothetical protein C45G9.4 in chromosome III
          Length = 292

 Score = 30.4 bits (67), Expect = 7.6
 Identities = 18/95 (18%), Positives = 41/95 (43%)
 Frame = +3

Query: 123 DKKEINSEQQFQRNEALDKAREKIASKTQSXXXXXXXXXXXXGTKKEGRASERMGEAQQR 302
           DKK++ S +  +      K + + +SKT                K++ + S++  +  +R
Sbjct: 8   DKKKLVSPKPTKTTSDKSKTKPRRSSKTSKKRKSKKGLFGCCAKKRKTKRSKKSAKRTKR 67

Query: 303 AGL*IETKKTRGTGPCRPSLLGAQEEGDIERQLQS 407
           +      KK     P +P+ +  Q +  +++ +QS
Sbjct: 68  SAPKKAPKKAPMKAPSKPAAIPQQAQASLQKPIQS 102

>sp|Q9BCZ4|SELS_MOUSE Selenoprotein S (VCP-interacting membrane protein) (Minor
           histocompatibility antigen H47)
          Length = 190

 Score = 30.4 bits (67), Expect = 7.6
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
 Frame = +3

Query: 27  ILSDYGWYILVLTIIICYIWQKISPLPRKVK---VDKKE--INSEQQFQRNEALDKAR 185
           +L+ YGWYIL   I++  + Q++S   R ++   +D+ E  +  +   +R EAL  AR
Sbjct: 29  LLASYGWYILFSCILLYIVIQRLSLRLRALRQRQLDQAETVLEPDVVVKRQEALAAAR 86

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,341,554
Number of Sequences: 369166
Number of extensions: 1377363
Number of successful extensions: 3626
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3616
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9798962520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00075

Planaria EST Database

DrC_00075

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail