Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_P16
(448 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8VWV6|WRK61_ARATH Probable WRKY transcription factor 61... 30 1.9
sp|P32242|OTX1_HUMAN Homeobox protein OTX1 30 3.2
sp|P42917|INHBB_BOVIN Inhibin beta B chain precursor (Activ... 29 4.1
sp|P09529|INHBB_HUMAN Inhibin beta B chain precursor (Activ... 29 4.1
sp|P04088|IHBB_PIG Inhibin beta B chain precursor (Activin ... 29 4.1
sp|P27093|INHBB_CHICK Inhibin beta B chain precursor (Activ... 29 4.1
sp|Q63410|OTX1_RAT Homeobox protein OTX1 28 7.1
sp|P80205|OTX1_MOUSE Homeobox protein OTX1 28 7.1
sp|Q04999|INHBB_MOUSE Inhibin beta B chain precursor (Activ... 28 7.1
sp|P17491|INHBB_RAT Inhibin beta B chain precursor (Activin... 28 7.1
>sp|Q8VWV6|WRK61_ARATH Probable WRKY transcription factor 61 (WRKY DNA-binding protein 61)
Length = 480
Score = 30.4 bits (67), Expect = 1.9
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 8 NGLGYKSKQKRHEEPDPVDPASLVHKKKETLRD-SYNPLMGDTC 136
N G+K+ HE+ D + P +LV K + ++R P M D C
Sbjct: 151 NSFGFKNDGDDHEDEDEILPQNLVKKTRVSVRSRCETPTMNDGC 194
>sp|P32242|OTX1_HUMAN Homeobox protein OTX1
Length = 354
Score = 29.6 bits (65), Expect = 3.2
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -2
Query: 348 HHH*VEHDTQTHAHTHIPLSLSDTHTRTHTQYEHQ 244
HHH H H H PLS S H H + HQ
Sbjct: 276 HHH--------HPHAHHPLSQSSGHHHHHHHHHHQ 302
>sp|P42917|INHBB_BOVIN Inhibin beta B chain precursor (Activin beta-B chain)
Length = 408
Score = 29.3 bits (64), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 300 IPLSLSDTHTRTHTQYEHQSLSPGSNQMCC 211
+P S S HT QY + L+PG+ CC
Sbjct: 344 VPGSASSFHTAVVNQYRMRGLNPGTVNSCC 373
>sp|P09529|INHBB_HUMAN Inhibin beta B chain precursor (Activin beta-B chain)
Length = 407
Score = 29.3 bits (64), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 300 IPLSLSDTHTRTHTQYEHQSLSPGSNQMCC 211
+P S S HT QY + L+PG+ CC
Sbjct: 343 VPGSASSFHTAVVNQYRMRGLNPGTVNSCC 372
>sp|P04088|IHBB_PIG Inhibin beta B chain precursor (Activin beta-B chain)
Length = 407
Score = 29.3 bits (64), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 300 IPLSLSDTHTRTHTQYEHQSLSPGSNQMCC 211
+P S S HT QY + L+PG+ CC
Sbjct: 343 VPGSASSFHTAVVNQYRMRGLNPGTVNSCC 372
>sp|P27093|INHBB_CHICK Inhibin beta B chain precursor (Activin beta-B chain)
Length = 391
Score = 29.3 bits (64), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 300 IPLSLSDTHTRTHTQYEHQSLSPGSNQMCC 211
+P S S HT QY + L+PG+ CC
Sbjct: 327 VPGSASSFHTAVVNQYRMRGLNPGTVNSCC 356
>sp|Q63410|OTX1_RAT Homeobox protein OTX1
Length = 355
Score = 28.5 bits (62), Expect = 7.1
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = -2
Query: 348 HHH*VEHDTQTHAHTHIPLSLSDTHTRTHTQYEHQSLSPGS 226
HHH H H H PLS S H H + H GS
Sbjct: 276 HHH--------HPHAHHPLSQSSGHHHHHHHHHHHQGYGGS 308
>sp|P80205|OTX1_MOUSE Homeobox protein OTX1
Length = 355
Score = 28.5 bits (62), Expect = 7.1
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = -2
Query: 348 HHH*VEHDTQTHAHTHIPLSLSDTHTRTHTQYEHQSLSPGS 226
HHH H H H PLS S H H + H GS
Sbjct: 276 HHH--------HPHAHHPLSQSSGHHHHHHHHHHHQGYGGS 308
>sp|Q04999|INHBB_MOUSE Inhibin beta B chain precursor (Activin beta-B chain)
Length = 367
Score = 28.5 bits (62), Expect = 7.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 300 IPLSLSDTHTRTHTQYEHQSLSPGSNQMCC 211
+P S S HT QY + L+PG CC
Sbjct: 303 VPGSASSFHTAVVNQYRMRGLNPGPVNSCC 332
>sp|P17491|INHBB_RAT Inhibin beta B chain precursor (Activin beta-B chain)
Length = 411
Score = 28.5 bits (62), Expect = 7.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 300 IPLSLSDTHTRTHTQYEHQSLSPGSNQMCC 211
+P S S HT QY + L+PG CC
Sbjct: 347 VPGSASSFHTAVVNQYRMRGLNPGPVNSCC 376
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,231,144
Number of Sequences: 369166
Number of extensions: 848515
Number of successful extensions: 2561
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2521
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2394311040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)