Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_M06
(341 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99125|CWLX_BACLI Probable N-acetylmuramoyl-L-alanine am... 32 0.35
sp|P36550|CWLL_BACLI N-acetylmuramoyl-L-alanine amidase cwl... 32 0.35
sp|P11477|DEF1_MOUSE Defensin-related cryptdin peptide prec... 31 0.78
sp|P50704|DEF6_MOUSE Defensin-related cryptdin 6/12 precursor 31 0.78
sp|Q64016|DEF17_MOUSE Defensin-related cryptdin 17 precurso... 31 0.78
sp|P50714|DEF16_MOUSE Defensin-related cryptdin 16 precursor 31 0.78
sp|P50711|DEF13_MOUSE Defensin-related cryptdin 13 precursor 31 0.78
sp|P50709|DEF11_MOUSE Defensin-related cryptdin 11 precursor 31 0.78
sp|P50707|DEF9_MOUSE Defensin-related cryptdin 9 precursor 31 0.78
sp|P20482|CNC_DROME Segmentation protein cap'n'collar 31 0.78
>sp|Q99125|CWLX_BACLI Probable N-acetylmuramoyl-L-alanine amidase precursor (Cell wall
hydrolase) (Autolysin) (ORFL3)
Length = 354
Score = 32.3 bits (72), Expect = 0.35
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 262 FIDRFNSHHH*VEHDTQTHAHTHTPPYLSVTHTHARTHNMSISLC 128
F+DR + H +H+ HAH Y+S +A T + + +C
Sbjct: 62 FVDRHEAQHIIPDHEVAYHAHDQNRCYVSFLKPNANTTALGVEMC 106
>sp|P36550|CWLL_BACLI N-acetylmuramoyl-L-alanine amidase cwlL precursor (Cell wall
hydrolase) (Autolysin)
Length = 360
Score = 32.3 bits (72), Expect = 0.35
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -2
Query: 262 FIDRFNSHHH*VEHDTQTHAHTHTPPYLSVTHTHARTHNMSISLC 128
F+DR + H E++ HAH Y+S +A T ++S+ +C
Sbjct: 63 FVDRKEAQHIIPENEVAYHAHDKNRCYVSFLKPNANTKSISVEMC 107
>sp|P11477|DEF1_MOUSE Defensin-related cryptdin peptide precursor (DEFCR) (Cryptdin-1)
Length = 93
Score = 31.2 bits (69), Expect = 0.78
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 26 VADSDRHDRVQGDpreEDEVRAVSVGSTFGCCLATETDAHIVCAC 160
+ ++D + + P EED+ +VS G G L E+ +VC C
Sbjct: 22 IQNTDEETKTEEQPGEEDQAVSVSFGDPEGTSLQEESLRDLVCYC 66
>sp|P50704|DEF6_MOUSE Defensin-related cryptdin 6/12 precursor
Length = 93
Score = 31.2 bits (69), Expect = 0.78
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 26 VADSDRHDRVQGDpreEDEVRAVSVGSTFGCCLATETDAHIVCAC 160
+ ++D + + P EED+ +VS G G L E+ +VC C
Sbjct: 22 IQNTDEETKTEEQPGEEDQAVSVSFGDPEGTSLQEESLRDLVCYC 66
>sp|Q64016|DEF17_MOUSE Defensin-related cryptdin 17 precursor (CRYP17)
Length = 82
Score = 31.2 bits (69), Expect = 0.78
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 26 VADSDRHDRVQGDpreEDEVRAVSVGSTFGCCLATETDAHIVCAC 160
+ ++D + + P EED+ +VS G G L E+ +VC C
Sbjct: 11 IQNTDEETKTEEQPGEEDQAVSVSFGDPEGTSLQEESLRDLVCYC 55
>sp|P50714|DEF16_MOUSE Defensin-related cryptdin 16 precursor
Length = 93
Score = 31.2 bits (69), Expect = 0.78
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 26 VADSDRHDRVQGDpreEDEVRAVSVGSTFGCCLATETDAHIVCAC 160
+ ++D + + P EED+ +VS G G L E+ +VC C
Sbjct: 22 IQNTDEETKTEEQPGEEDQAVSVSFGDPEGTSLQEESLRDLVCYC 66
>sp|P50711|DEF13_MOUSE Defensin-related cryptdin 13 precursor
Length = 93
Score = 31.2 bits (69), Expect = 0.78
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 26 VADSDRHDRVQGDpreEDEVRAVSVGSTFGCCLATETDAHIVCAC 160
+ ++D + + P EED+ +VS G G L E+ +VC C
Sbjct: 22 IQNTDEETKTEEQPGEEDQAVSVSFGDPEGTSLQEESLRDLVCYC 66
>sp|P50709|DEF11_MOUSE Defensin-related cryptdin 11 precursor
Length = 85
Score = 31.2 bits (69), Expect = 0.78
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 26 VADSDRHDRVQGDpreEDEVRAVSVGSTFGCCLATETDAHIVCAC 160
+ ++D + + P EED+ +VS G G L E+ +VC C
Sbjct: 14 IQNTDEETKTEEQPGEEDQAVSVSFGDPEGTSLQEESLRDLVCYC 58
>sp|P50707|DEF9_MOUSE Defensin-related cryptdin 9 precursor
Length = 93
Score = 31.2 bits (69), Expect = 0.78
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 26 VADSDRHDRVQGDpreEDEVRAVSVGSTFGCCLATETDAHIVCAC 160
+ ++D + + P EED+ +VS G G L E+ +VC C
Sbjct: 22 IQNTDEETKTEEQPGEEDQAVSVSFGDPEGSSLQEESLRDLVCYC 66
>sp|P20482|CNC_DROME Segmentation protein cap'n'collar
Length = 1383
Score = 31.2 bits (69), Expect = 0.78
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -2
Query: 244 SHHH*VEHDTQTHAHTHTPPYLSVTHTHARTHNMSISLCRQAATKCA 104
S+HH H HAH H+ + S+ H HA H + + Q A + A
Sbjct: 586 SYHHPHPHHGHPHAHPHSHHHASMHHAHAH-HAAAAAAAHQRAVQQA 631
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,069,937
Number of Sequences: 369166
Number of extensions: 616138
Number of successful extensions: 2111
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2071
length of database: 68,354,980
effective HSP length: 81
effective length of database: 53,391,445
effective search space used: 1708526240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)