Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_O12
(685 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9BQE4|SELS_HUMAN Selenoprotein S (VCP-interacting membr... 53 9e-07
sp|Q8VHV8|SELS_RAT Selenoprotein S (VCP-interacting membran... 51 3e-06
sp|Q9BCZ4|SELS_MOUSE Selenoprotein S (VCP-interacting membr... 50 6e-06
sp|P36080|YKI2_YEAST Hypothetical 50.5 kDa protein in MDH1-... 32 2.0
sp|Q9P7C5|CWF16_SCHPO Cell cycle control protein cwf16 31 3.5
sp|Q8VWV6|WRK61_ARATH Probable WRKY transcription factor 61... 30 4.5
sp|P32242|OTX1_HUMAN Homeobox protein OTX1 30 7.7
>sp|Q9BQE4|SELS_HUMAN Selenoprotein S (VCP-interacting membrane protein)
Length = 189
Score = 52.8 bits (125), Expect = 9e-07
Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 13/153 (8%)
Frame = +3
Query: 27 ILSDYGWYILVLTIIICYIWQKISPLPRKVKVDKKE-----INSEQQFQRNEALDKAREK 191
+L+ YGWYI+ I++ ++QK+S R ++ + + + + +R EAL AR K
Sbjct: 29 LLATYGWYIVFSCILLYVVFQKLSARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLK 88
Query: 192 MQAKLNLDAAVXXXXXXXXXXXXXXXXXXXXXXLNNGLGYKSKQKRHEEPDPVDPA-SLV 368
MQ +LN + G YK K+ +E D P+ S V
Sbjct: 89 MQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSV 148
Query: 369 HKKKETLR----DSYNPLMGD---TCSRFRPAR 446
K+K + YNPL G+ CS +RP R
Sbjct: 149 LKRKSDRKPLRGGGYNPLSGEGGGACS-WRPGR 180
>sp|Q8VHV8|SELS_RAT Selenoprotein S (VCP-interacting membrane protein) (Sg2)
Length = 190
Score = 50.8 bits (120), Expect = 3e-06
Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Frame = +3
Query: 27 ILSDYGWYILVLTIIICYIWQKISPLPRKVK---VDKKE--INSEQQFQRNEALDKAREK 191
+L+ YGWYIL +++ + QK+S R ++ +D+ E + + +R EAL AR +
Sbjct: 29 LLASYGWYILFSCVLLYIVIQKLSLRLRALRQRQLDQAEAVLEPDVVVKRQEALAAARLR 88
Query: 192 MQAKLNLDAAVXXXXXXXXXXXXXXXXXXXXXXLNNGLGYKSKQKRHEEPDPVDP--ASL 365
MQ LN + G YK R +E D P +S+
Sbjct: 89 MQEDLNAQVEKHKEKQRQLEEEKRRQKIEMWDSMQEGRSYKRNSGRPQEEDGPGPSTSSV 148
Query: 366 VHK----KKETLRDSYNPLMGD---TCSRFRPAR 446
+ K KK YNPL G+ TCS +RP R
Sbjct: 149 IPKGKSDKKPLRGGGYNPLTGEGGGTCS-WRPGR 181
>sp|Q9BCZ4|SELS_MOUSE Selenoprotein S (VCP-interacting membrane protein) (Minor
histocompatibility antigen H47)
Length = 190
Score = 50.1 bits (118), Expect = 6e-06
Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Frame = +3
Query: 27 ILSDYGWYILVLTIIICYIWQKISPLPRKVK---VDKKE--INSEQQFQRNEALDKAREK 191
+L+ YGWYIL I++ + Q++S R ++ +D+ E + + +R EAL AR +
Sbjct: 29 LLASYGWYILFSCILLYIVIQRLSLRLRALRQRQLDQAETVLEPDVVVKRQEALAAARLR 88
Query: 192 MQAKLNLDAAVXXXXXXXXXXXXXXXXXXXXXXLNNGLGYKSKQKRHEEPDPVDP--ASL 365
MQ LN + G YK R +E D P +S+
Sbjct: 89 MQEDLNAQVEKHKEKLRQLEEEKRRQKIEMWDSMQEGRSYKRNSGRPQEEDGPGPSTSSV 148
Query: 366 VHK----KKETLRDSYNPLMGD---TCSRFRPAR 446
+ K KK YNPL G+ TCS +RP R
Sbjct: 149 IPKGKSDKKPLRGGGYNPLTGEGGGTCS-WRPGR 181
>sp|P36080|YKI2_YEAST Hypothetical 50.5 kDa protein in MDH1-VMA5 intergenic region
Length = 434
Score = 31.6 bits (70), Expect = 2.0
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +3
Query: 120 VDKKEINSEQQFQRNEALDKAREKMQAKLN 209
V+KK I E++ QR + L+ R K+QAK++
Sbjct: 157 VEKKSITEEEKLQRKKNLEALRSKLQAKIS 186
>sp|Q9P7C5|CWF16_SCHPO Cell cycle control protein cwf16
Length = 270
Score = 30.8 bits (68), Expect = 3.5
Identities = 13/38 (34%), Positives = 30/38 (78%), Gaps = 2/38 (5%)
Frame = +3
Query: 117 KVDKKEINSEQQFQRNEALDKAREK--MQAKLNLDAAV 224
K+++K +++++Q Q ++ALD+ REK ++++N+D A+
Sbjct: 142 KLEQKTLDTKRQMQISDALDELREKSARRSRVNIDDAI 179
>sp|Q8VWV6|WRK61_ARATH Probable WRKY transcription factor 61 (WRKY DNA-binding protein 61)
Length = 480
Score = 30.4 bits (67), Expect = 4.5
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 297 NGLGYKSKQKRHEEPDPVDPASLVHKKKETLRD-SYNPLMGDTC 425
N G+K+ HE+ D + P +LV K + ++R P M D C
Sbjct: 151 NSFGFKNDGDDHEDEDEILPQNLVKKTRVSVRSRCETPTMNDGC 194
>sp|P32242|OTX1_HUMAN Homeobox protein OTX1
Length = 354
Score = 29.6 bits (65), Expect = 7.7
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -1
Query: 637 HHH*VEHDTQTHAHTHIPLSLSDTHTRTHTQYEHQ 533
HHH H H H PLS S H H + HQ
Sbjct: 276 HHH--------HPHAHHPLSQSSGHHHHHHHHHHQ 302
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,742,849
Number of Sequences: 369166
Number of extensions: 1087659
Number of successful extensions: 3445
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3402
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5830600200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)