Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_E23
(465 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36550|CWLL_BACLI N-acetylmuramoyl-L-alanine amidase cwl... 32 0.70
sp|P11477|DEF1_MOUSE Defensin-related cryptdin peptide prec... 31 1.2
sp|P50704|DEF6_MOUSE Defensin-related cryptdin 6/12 precursor 31 1.2
sp|Q64016|DEF17_MOUSE Defensin-related cryptdin 17 precurso... 31 1.2
sp|P50714|DEF16_MOUSE Defensin-related cryptdin 16 precursor 31 1.2
sp|P50711|DEF13_MOUSE Defensin-related cryptdin 13 precursor 31 1.2
sp|P50709|DEF11_MOUSE Defensin-related cryptdin 11 precursor 31 1.2
sp|P50707|DEF9_MOUSE Defensin-related cryptdin 9 precursor 31 1.2
sp|Q8VWV6|WRK61_ARATH Probable WRKY transcription factor 61... 30 2.0
sp|P28310|DEF3_MOUSE Defensin-related cryptdin 3 precursor 30 2.7
>sp|P36550|CWLL_BACLI N-acetylmuramoyl-L-alanine amidase cwlL precursor (Cell wall
hydrolase) (Autolysin)
Length = 360
Score = 32.0 bits (71), Expect = 0.70
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 386 FIDRFNSHHH*VERDTQTHAHTHTPPYLSVTHTHARTHNMSISLC 252
F+DR + H E + HAH Y+S +A T ++S+ +C
Sbjct: 63 FVDRKEAQHIIPENEVAYHAHDKNRCYVSFLKPNANTKSISVEMC 107
>sp|P11477|DEF1_MOUSE Defensin-related cryptdin peptide precursor (DEFCR) (Cryptdin-1)
Length = 93
Score = 31.2 bits (69), Expect = 1.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 150 VADSDRHDRVQGDpreEDEVRAVSVGSTFGCCLATETDAHIVCAC 284
+ ++D + + P EED+ +VS G G L E+ +VC C
Sbjct: 22 IQNTDEETKTEEQPGEEDQAVSVSFGDPEGTSLQEESLRDLVCYC 66
>sp|P50704|DEF6_MOUSE Defensin-related cryptdin 6/12 precursor
Length = 93
Score = 31.2 bits (69), Expect = 1.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 150 VADSDRHDRVQGDpreEDEVRAVSVGSTFGCCLATETDAHIVCAC 284
+ ++D + + P EED+ +VS G G L E+ +VC C
Sbjct: 22 IQNTDEETKTEEQPGEEDQAVSVSFGDPEGTSLQEESLRDLVCYC 66
>sp|Q64016|DEF17_MOUSE Defensin-related cryptdin 17 precursor (CRYP17)
Length = 82
Score = 31.2 bits (69), Expect = 1.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 150 VADSDRHDRVQGDpreEDEVRAVSVGSTFGCCLATETDAHIVCAC 284
+ ++D + + P EED+ +VS G G L E+ +VC C
Sbjct: 11 IQNTDEETKTEEQPGEEDQAVSVSFGDPEGTSLQEESLRDLVCYC 55
>sp|P50714|DEF16_MOUSE Defensin-related cryptdin 16 precursor
Length = 93
Score = 31.2 bits (69), Expect = 1.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 150 VADSDRHDRVQGDpreEDEVRAVSVGSTFGCCLATETDAHIVCAC 284
+ ++D + + P EED+ +VS G G L E+ +VC C
Sbjct: 22 IQNTDEETKTEEQPGEEDQAVSVSFGDPEGTSLQEESLRDLVCYC 66
>sp|P50711|DEF13_MOUSE Defensin-related cryptdin 13 precursor
Length = 93
Score = 31.2 bits (69), Expect = 1.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 150 VADSDRHDRVQGDpreEDEVRAVSVGSTFGCCLATETDAHIVCAC 284
+ ++D + + P EED+ +VS G G L E+ +VC C
Sbjct: 22 IQNTDEETKTEEQPGEEDQAVSVSFGDPEGTSLQEESLRDLVCYC 66
>sp|P50709|DEF11_MOUSE Defensin-related cryptdin 11 precursor
Length = 85
Score = 31.2 bits (69), Expect = 1.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 150 VADSDRHDRVQGDpreEDEVRAVSVGSTFGCCLATETDAHIVCAC 284
+ ++D + + P EED+ +VS G G L E+ +VC C
Sbjct: 14 IQNTDEETKTEEQPGEEDQAVSVSFGDPEGTSLQEESLRDLVCYC 58
>sp|P50707|DEF9_MOUSE Defensin-related cryptdin 9 precursor
Length = 93
Score = 31.2 bits (69), Expect = 1.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 150 VADSDRHDRVQGDpreEDEVRAVSVGSTFGCCLATETDAHIVCAC 284
+ ++D + + P EED+ +VS G G L E+ +VC C
Sbjct: 22 IQNTDEETKTEEQPGEEDQAVSVSFGDPEGSSLQEESLRDLVCYC 66
>sp|Q8VWV6|WRK61_ARATH Probable WRKY transcription factor 61 (WRKY DNA-binding protein 61)
Length = 480
Score = 30.4 bits (67), Expect = 2.0
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 23 NGLGYKSKQKRHEEPDPVDPASLVHKKKETLRD-SYNPLMGDTC 151
N G+K+ HE+ D + P +LV K + ++R P M D C
Sbjct: 151 NSFGFKNDGDDHEDEDEILPQNLVKKTRVSVRSRCETPTMNDGC 194
>sp|P28310|DEF3_MOUSE Defensin-related cryptdin 3 precursor
Length = 93
Score = 30.0 bits (66), Expect = 2.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 150 VADSDRHDRVQGDpreEDEVRAVSVGSTFGCCLATETDAHIVCAC 284
+ ++D + + P E+D+ +VS G G L E+ +VC C
Sbjct: 22 IQNTDEETKTEEQPGEDDQAVSVSFGDPEGSSLQEESLRDLVCYC 66
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,358,712
Number of Sequences: 369166
Number of extensions: 909359
Number of successful extensions: 2715
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2704
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2633927485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)