Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_L07
(346 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42917|INHBB_BOVIN Inhibin beta B chain precursor (Activ... 28 6.6
sp|P09529|INHBB_HUMAN Inhibin beta B chain precursor (Activ... 28 6.6
sp|P04088|IHBB_PIG Inhibin beta B chain precursor (Activin ... 28 6.6
sp|P27093|INHBB_CHICK Inhibin beta B chain precursor (Activ... 28 6.6
sp|P60487|PLPP_MOUSE Pyridoxal phosphate phosphatase (PLP p... 28 8.6
>sp|P42917|INHBB_BOVIN Inhibin beta B chain precursor (Activin beta-B chain)
Length = 408
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 192 PLSLSDTHTRTHTQYEHQSLSPGSNQMCC 106
P S S HT QY + L+PG+ CC
Sbjct: 345 PGSASSFHTAVVNQYRMRGLNPGTVNSCC 373
>sp|P09529|INHBB_HUMAN Inhibin beta B chain precursor (Activin beta-B chain)
Length = 407
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 192 PLSLSDTHTRTHTQYEHQSLSPGSNQMCC 106
P S S HT QY + L+PG+ CC
Sbjct: 344 PGSASSFHTAVVNQYRMRGLNPGTVNSCC 372
>sp|P04088|IHBB_PIG Inhibin beta B chain precursor (Activin beta-B chain)
Length = 407
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 192 PLSLSDTHTRTHTQYEHQSLSPGSNQMCC 106
P S S HT QY + L+PG+ CC
Sbjct: 344 PGSASSFHTAVVNQYRMRGLNPGTVNSCC 372
>sp|P27093|INHBB_CHICK Inhibin beta B chain precursor (Activin beta-B chain)
Length = 391
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 192 PLSLSDTHTRTHTQYEHQSLSPGSNQMCC 106
P S S HT QY + L+PG+ CC
Sbjct: 328 PGSASSFHTAVVNQYRMRGLNPGTVNSCC 356
>sp|P60487|PLPP_MOUSE Pyridoxal phosphate phosphatase (PLP phosphatase)
Length = 292
Score = 27.7 bits (60), Expect = 8.6
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 54 RVQGDpreEDEVRAVSVG--STFGCCLATETDAHI 152
R+ GDP E+ VRAV VG F TE AH+
Sbjct: 128 RLAGDPGEDPRVRAVLVGYDEQFSFSRLTEACAHL 162
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,119,871
Number of Sequences: 369166
Number of extensions: 376944
Number of successful extensions: 914
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 68,354,980
effective HSP length: 82
effective length of database: 53,206,710
effective search space used: 1702614720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)