• TOP
• EST
• Cluster

Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00029
         (1321 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P32369|BAIG_EUBSP  Bile acid transporter                        51   7e-06
sp|P37643|YHJE_ECOLI  Inner membrane metabolite transport pr...    50   1e-05
sp|P46333|CSBC_BACSU  Probable metabolite transport protein ...    50   1e-05
sp|Q92EE1|LMRB_LISIN  Lincomycin resistance protein lmrB           49   2e-05
sp|Q8Y9K8|LMRB_LISMO  Lincomycin resistance protein lmrB           49   2e-05
sp|Q58955|YF60_METJA  Putative transporter MJ1560                  49   2e-05
sp|P47234|LACY_CITFR  Lactose permease (Lactose-proton symport)    47   1e-04
sp|P46907|NARK_BACSU  Nitrite extrusion protein (Nitrite fac...    47   2e-04
sp|P58120|PMRA_LACLA  Multi-drug resistance efflux pump pmrA...    42   0.003
sp|P25744|MDTG_ECOLI  Multidrug resistance protein mdtG >gi|...    42   0.004

>sp|P32369|BAIG_EUBSP Bile acid transporter
          Length = 477

 Score = 51.2 bits (121), Expect = 7e-06
 Identities = 33/144 (22%), Positives = 67/144 (46%), Gaps = 1/144 (0%)
 Frame = +3

Query: 666  GLNGADAALITSLLYIVSAACSPVMGFLIDLTGRNLFWVLTGTLATLGS-HALYAFTFAN 842
            G++  +   I+  L + SAAC+P++G L D+ GR    +L   +   G+     A +   
Sbjct: 42   GIDYNNTTWISLALAMSSAACAPILGKLGDVLGRRTTLLLGIVIFAAGNVLTAVATSLIF 101

Query: 843  PLGVMIFLGVSYSVLASSLWPMVALVIPAHQRGTAFGIMQSVQNLGLAVVAIIAGLIQDK 1022
             L     +G+  + ++  +   +    P  + G AFG+   + +  + V     GLI + 
Sbjct: 102  MLAARFIVGIGTAAISPIVMAYIVTEYPQEETGKAFGLYMLISSGAVVVGPTCGGLIMNA 161

Query: 1023 YGFLILEVFFSVWLCITLVLIVLL 1094
             G+ ++     +W+C+ L ++V L
Sbjct: 162  AGWRVM-----MWVCVALCVVVFL 180

>sp|P37643|YHJE_ECOLI Inner membrane metabolite transport protein yhjE
          Length = 440

 Score = 50.4 bits (119), Expect = 1e-05
 Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 13/212 (6%)
 Frame = +3

Query: 501  ILQRNKKNSEDEKISLGDI--RHFSVAF---WIISGICVAYYVAVFPFVSLSKVFLIQKY 665
            + ++  K  +  KI LG +  +H  V     +I+      +Y+     ++ S        
Sbjct: 224  VFEKVAKAKKQVKIPLGTLLTKHVRVTVLGTFIMLATYTLFYIMTVYSMTFSTAAAPVGL 283

Query: 666  GLNGADAALITSLLYIVSAACSPVMGFLIDLTGRNLFWVLTGTLATLGSHALYAFT---- 833
            GL   +   +  +  I      PV G L D  GR    V+  TL  L   AL+AF     
Sbjct: 284  GLPRNEVLWMLMMAVIGFGVMVPVAGLLADAFGRRKSMVIITTLIIL--FALFAFNPLLG 341

Query: 834  FANPLGVMIFLGVSYSVLASSLWPMVALV---IPAHQRGTAFGIMQSVQN-LGLAVVAII 1001
              NP+ V  FL +  S++  +  PM AL+    P   R T      +V + LG +V   I
Sbjct: 342  SGNPILVFAFLLLGLSLMGLTFGPMGALLPELFPTEVRYTGASFSYNVASILGASVAPYI 401

Query: 1002 AGLIQDKYGFLILEVFFSVWLCITLVLIVLLY 1097
            A  +Q  YG   + ++ +    +TL+ ++L +
Sbjct: 402  AAWLQTNYGLGAVGLYLAAMAGLTLIALLLTH 433

>sp|P46333|CSBC_BACSU Probable metabolite transport protein csbC
          Length = 461

 Score = 50.4 bits (119), Expect = 1e-05
 Identities = 63/256 (24%), Positives = 110/256 (42%), Gaps = 23/256 (8%)
 Frame = +3

Query: 501  ILQRNKKNSEDEKISLGDIRHFSVAFWIISGICVAYYVAVFP-FVSLSKVF-----LIQK 662
            + +  +  +E ++ +LG ++    A WI   + +   +A+F   V ++ V      +  K
Sbjct: 216  LAEMKQGEAEKKETTLGVLK----AKWIRPMLLIGVGLAIFQQAVGINTVIYYAPTIFTK 271

Query: 663  YGLNGADAALITSLLYIVSAACSPVMGFLIDLTGRN--LFW----------VLTGTLATL 806
             GL  + +AL T  + I++         LID  GR   L W           L+G L TL
Sbjct: 272  AGLGTSASALGTMGIGILNVIMCITAMILIDRVGRKKLLIWGSVGITLSLAALSGVLLTL 331

Query: 807  GSHALYAFTFANPLGVMIFLGVSYSVLASSLWPMVALVI-----PAHQRGTAFGIMQSVQ 971
            G  A  A+        ++FLGV Y V   + W  V  V+     P+  RG A G    V 
Sbjct: 332  GLSASTAWM------TVVFLGV-YIVFYQATWGPVVWVLMPELFPSKARGAATGFTTLVL 384

Query: 972  NLGLAVVAIIAGLIQDKYGFLILEVFFSVWLCITLVLIVLLYLWDVQNGGKLNESGPSRR 1151
            +    +V+++  L+    G   + + FSV +C+ L      Y+     G  L E   S +
Sbjct: 385  SAANLIVSLVFPLMLSAMGIAWVFMVFSV-ICL-LSFFFAFYMVPETKGKSLEEIEASLK 442

Query: 1152 KKLKKSEYNVSETMDK 1199
            K+ KK +   ++ +++
Sbjct: 443  KRFKKKKSTQNQVLNE 458

>sp|Q92EE1|LMRB_LISIN Lincomycin resistance protein lmrB
          Length = 471

 Score = 49.3 bits (116), Expect = 2e-05
 Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 8/180 (4%)
 Frame = +3

Query: 582  IISGICVAYYVAVFPFVSLSKVF--LIQKYGLNGADAALITSLLYIVSAACSPVMGFLID 755
            II+   +A ++ +F   +L+     LIQ + ++ A    +T+   +      P+ G L+ 
Sbjct: 16   IIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQ 75

Query: 756  -LTGRNLFWV-----LTGTLATLGSHALYAFTFANPLGVMIFLGVSYSVLASSLWPMVAL 917
              T R LF+      + GTL      A  + TFA  +   +   V  ++L   ++  + L
Sbjct: 76   WFTTRGLFFTAVSFSIAGTLI-----AALSPTFAMLMIGRVVQAVGTALLLPLMFNTILL 130

Query: 918  VIPAHQRGTAFGIMQSVQNLGLAVVAIIAGLIQDKYGFLILEVFFSVWLCITLVLIVLLY 1097
            + P H+RG+A G++  V     AV   I+GLI +      L   +  W+ +  ++I LL+
Sbjct: 131  IFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILEN-----LTWNWIFWISLPFLIIALLF 185

>sp|Q8Y9K8|LMRB_LISMO Lincomycin resistance protein lmrB
          Length = 471

 Score = 49.3 bits (116), Expect = 2e-05
 Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 8/180 (4%)
 Frame = +3

Query: 582  IISGICVAYYVAVFPFVSLSKVF--LIQKYGLNGADAALITSLLYIVSAACSPVMGFLID 755
            II+   +A ++ +F   +L+     LIQ + ++ A    +T+   +      P+ G L+ 
Sbjct: 16   IIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQ 75

Query: 756  -LTGRNLFWV-----LTGTLATLGSHALYAFTFANPLGVMIFLGVSYSVLASSLWPMVAL 917
              T R LF+      + GTL      A  + TFA  +   +   V  ++L   ++  + L
Sbjct: 76   WFTTRGLFFTAVSFSIAGTLI-----AALSPTFAMLMIGRVVQAVGTALLLPLMFNTILL 130

Query: 918  VIPAHQRGTAFGIMQSVQNLGLAVVAIIAGLIQDKYGFLILEVFFSVWLCITLVLIVLLY 1097
            + P H+RG+A G++  V     AV   I+GLI +      L   +  W+ +  ++I LL+
Sbjct: 131  IFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILEN-----LTWNWIFWISLPFLIIALLF 185

>sp|Q58955|YF60_METJA Putative transporter MJ1560
          Length = 386

 Score = 49.3 bits (116), Expect = 2e-05
 Identities = 49/227 (21%), Positives = 106/227 (46%), Gaps = 7/227 (3%)
 Frame = +3

Query: 441  CVFSLICALVLAMFDRRAERILQRNKKNSEDEKIS------LGDIRHFSVAFWIISGICV 602
            C F  I A +++ + +  + +  +NK+  + +KIS          R+FS +F II+   V
Sbjct: 166  CGFLGILAAIIS-YMKLEDIVFNKNKEKIDVKKISTLFSFEFLKNRNFSSSF-IINVSNV 223

Query: 603  AYYVAVFPFVSLSKVFLIQKYGLNGADAALITSLLYIVSAACSPVMGFLIDLTGRNLFWV 782
                 ++ +++L  +     Y +  +    + +L  I+ A      G L D  G N+  +
Sbjct: 224  MINAGIYAYLALYAI----NYNITISQVGFMIALTNILMALLQRSFGKLYDKLG-NIMII 278

Query: 783  LTGTLATLGSHALY-AFTFANPLGVMIFLGVSYSVLASSLWPMVALVIPAHQRGTAFGIM 959
            +   + + G + L  + TF   L  +  + V  S+ +++   +    IP H++G A G+ 
Sbjct: 279  IGIFIISFGMYLLSTSTTFLTILASLTIIAVGSSISSTATTSLAVKDIPTHRKGEAMGLF 338

Query: 960  QSVQNLGLAVVAIIAGLIQDKYGFLILEVFFSVWLCITLVLIVLLYL 1100
             +  N+G+ + A+  G + D  G   +  F +++   ++V+ ++ YL
Sbjct: 339  TTSINIGMFIGAVSFGFLADILGIANMYKFSAIF---SIVVGIISYL 382

>sp|P47234|LACY_CITFR Lactose permease (Lactose-proton symport)
          Length = 416

 Score = 47.0 bits (110), Expect = 1e-04
 Identities = 45/201 (22%), Positives = 85/201 (42%), Gaps = 14/201 (6%)
 Frame = +3

Query: 576  FWIISGICVAYYVAVFPFVSLSKVFLIQKYGLNGADAALITSLLYIVSAACSPVMGFLID 755
            FW+       Y+  +  +     ++L +   ++  D  +I + + + S    P+ G L D
Sbjct: 9    FWMFGFFFFFYFFIMGAYFPFFPIWLHEVNHISKGDTGIIFACISLFSLLFQPIFGLLSD 68

Query: 756  LTG--RNLFWVLTGTLATLGSHALYAFTFANPLGVM-------IFLGVSYSVLASSLWPM 908
              G  ++L WV+TG L       +Y F     + ++       I+LG  Y+  A ++   
Sbjct: 69   KLGLRKHLLWVITGMLVMFAPFFIYVFGPLLQVNILLGSIVGGIYLGFIYNAGAPAI--- 125

Query: 909  VALVIPAHQRGT-AFGIMQSVQNLGLAVVAIIAGLIQDKYGFLILEVFFSVWL----CIT 1073
             A +  A +R    FG  +    +G A+ A IAG++        +   F  WL     + 
Sbjct: 126  EAYIEKASRRSNFEFGRARMFGCVGWALCASIAGIM------FTINNQFVFWLGSGCAVI 179

Query: 1074 LVLIVLLYLWDVQNGGKLNES 1136
            L L++L    DV +  K+ ++
Sbjct: 180  LALLLLFSKTDVPSSAKVADA 200

>sp|P46907|NARK_BACSU Nitrite extrusion protein (Nitrite facilitator)
          Length = 395

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 10/183 (5%)
 Frame = +3

Query: 579  WIISGICVAYYVAVFPFVSLSKVFLIQKYGLNGADAALITSLLYIVSAACSPVMGFLIDL 758
            W +S      + A   F      FL++ +GLN ADA L T+    VS    P  GFL D 
Sbjct: 205  WFLSLFYFITFGAFVAFTIYLPNFLVEHFGLNPADAGLRTAGFIAVSTLLRPAGGFLADK 264

Query: 759  TG--RNLFWVLTGTLATLGSHALYAFTFANPLGVMIFLGVSYSVLASSLWPMVALVIP-- 926
                R L +V TG   TL    L   +F+  +G+  F  ++ +V +      V  ++P  
Sbjct: 265  MSPLRILMFVFTG--LTLSGIIL---SFSPTIGLYTFGSLTVAVCSGIGNGTVFKLVPFY 319

Query: 927  -AHQRGTAFGIMQSVQNLG-----LAVVAIIAGLIQDKYGFLILEVFFSVWLCITLVLIV 1088
             + Q G A GI+ ++  LG     L + ++     Q   GF+ L    S     + VL++
Sbjct: 320  FSKQAGIANGIVSAMGGLGGFFPPLILASVFQATGQYAIGFMAL----SEVALASFVLVI 375

Query: 1089 LLY 1097
             +Y
Sbjct: 376  WMY 378

>sp|P58120|PMRA_LACLA Multi-drug resistance efflux pump pmrA homolog
          Length = 405

 Score = 42.4 bits (98), Expect = 0.003
 Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 5/178 (2%)
 Frame = +3

Query: 579  WIISGICVAYYVAVFPFVSLSKVFLIQKYGLNGADAALITSLLYIVSAACS----PVMGF 746
            WI      + +  V PF+ L     IQ  G++G +  L + L + + A  S    P+ G 
Sbjct: 17   WIGCFFVGSSFSLVMPFLPL----YIQGLGVSGGNVELYSGLAFSLPALASGLVAPIWGR 72

Query: 747  LIDLTGRNLFWVLTGTLATLGSHAL-YAFTFANPLGVMIFLGVSYSVLASSLWPMVALVI 923
            L D  GR +  V    + TL    + +A      LG+ + +G     + +S   M+A   
Sbjct: 73   LADEHGRKVMMVRASIVMTLTMGGIAFAPNVWWLLGLRLLMGFFSGYIPNST-AMIASQA 131

Query: 924  PAHQRGTAFGIMQSVQNLGLAVVAIIAGLIQDKYGFLILEVFFSVWLCITLVLIVLLY 1097
            P  + G A G + +    G  +   + GL+ + +G  +  VF  V   + L  ++ ++
Sbjct: 132  PKDKSGYALGTLATAMVSGTLIGPSLGGLLAEWFG--MANVFLIVGALLALATLLTIF 187

>sp|P25744|MDTG_ECOLI Multidrug resistance protein mdtG
 sp|Q8X9I3|MDTG_ECO57 Multidrug resistance protein mdtG
          Length = 408

 Score = 42.0 bits (97), Expect = 0.004
 Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 9/185 (4%)
 Frame = +3

Query: 570  VAFWIISGICVAYYVAVFPFVSLSKVFLIQKYGLNGADA-----ALITSLLYIVSAACSP 734
            +  W+   +  A +  V PF+ L     +++ G+ G  A      ++ S+ ++ SA  SP
Sbjct: 17   IVAWLGCFLTGAAFSLVMPFLPL----YVEQLGVTGHSALNMWSGIVFSITFLFSAIASP 72

Query: 735  VMGFLIDLTGRNLFWVLT----GTLATLGSHALYAFTFANPLGVMIFLGVSYSVLASSLW 902
              G L D  GR L  + +    G +  L   A   + F     ++  LG  +   A++L 
Sbjct: 73   FWGGLADRKGRKLMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLG-GFVPNANAL- 130

Query: 903  PMVALVIPAHQRGTAFGIMQSVQNLGLAVVAIIAGLIQDKYGFLILEVFFSVWLCITLVL 1082
              +A  +P ++ G A G + +    G  +  +  GL+ D YG  +  VFF     + L  
Sbjct: 131  --IATQVPRNKSGWALGTLSTGGVSGALLGPMAGGLLADSYG--LRPVFFITASVLILCF 186

Query: 1083 IVLLY 1097
             V L+
Sbjct: 187  FVTLF 191

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,528,254
Number of Sequences: 369166
Number of extensions: 3014744
Number of successful extensions: 8577
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8555
length of database: 68,354,980
effective HSP length: 114
effective length of database: 47,295,190
effective search space used: 15370936750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_016_M10
2. Dr_sW_001_L03
3. Dr_sW_006_C05
4. Dr_sW_015_J22
5. Dr_sW_016_G19
6. Dr_sW_027_O10
7. Dr_sW_002_M10