Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_M10
(626 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q58955|YF60_METJA Putative transporter MJ1560 39 0.014
sp|P37643|YHJE_ECOLI Inner membrane metabolite transport pr... 37 0.032
sp|P46333|CSBC_BACSU Probable metabolite transport protein ... 37 0.032
sp|P76628|YGAY_ECOLI Hypothetical protein ygaY 37 0.054
sp|Q8X4V6|YGAY_ECO57 Hypothetical protein ygaY 37 0.054
sp|Q8Z4Z9|YFCJ_SALTI Hypothetical UPF0226 protein yfcJ 36 0.092
sp|P32369|BAIG_EUBSP Bile acid transporter 36 0.092
sp|Q92EE1|LMRB_LISIN Lincomycin resistance protein lmrB 35 0.12
sp|Q8Y9K8|LMRB_LISMO Lincomycin resistance protein lmrB 35 0.12
sp|Q8ZNB8|YFCJ_SALTY Hypothetical UPF0226 protein yfcJ 34 0.35
>sp|Q58955|YF60_METJA Putative transporter MJ1560
Length = 386
Score = 38.5 bits (88), Expect = 0.014
Identities = 21/90 (23%), Positives = 46/90 (51%)
Frame = +1
Query: 136 TFANPLGVMIFLGVSYSVLASSLWPMVALVIPAHQRGTAFGIMQSVQNLGLAVVAIIAGL 315
TF L + + V S+ +++ + IP H++G A G+ + N+G+ + A+ G
Sbjct: 296 TFLTILASLTIIAVGSSISSTATTSLAVKDIPTHRKGEAMGLFTTSINIGMFIGAVSFGF 355
Query: 316 IQDKYGFLILEVFFSVWLCITLVLIVLLYL 405
+ D G + F +++ ++V+ ++ YL
Sbjct: 356 LADILGIANMYKFSAIF---SIVVGIISYL 382
>sp|P37643|YHJE_ECOLI Inner membrane metabolite transport protein yhjE
Length = 440
Score = 37.4 bits (85), Expect = 0.032
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Frame = +1
Query: 121 ALYAFT----FANPLGVMIFLGVSYSVLASSLWPMVALV---IPAHQRGTAFGIMQSVQN 279
AL+AF NP+ V FL + S++ + PM AL+ P R T +V +
Sbjct: 332 ALFAFNPLLGSGNPILVFAFLLLGLSLMGLTFGPMGALLPELFPTEVRYTGASFSYNVAS 391
Query: 280 -LGLAVVAIIAGLIQDKYGFLILEVFFSVWLCITLVLIVLLY 402
LG +V IA +Q YG + ++ + +TL+ ++L +
Sbjct: 392 ILGASVAPYIAAWLQTNYGLGAVGLYLAAMAGLTLIALLLTH 433
>sp|P46333|CSBC_BACSU Probable metabolite transport protein csbC
Length = 461
Score = 37.4 bits (85), Expect = 0.032
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Frame = +1
Query: 160 MIFLGVSYSVLASSLWPMVALVI-----PAHQRGTAFGIMQSVQNLGLAVVAIIAGLIQD 324
++FLGV Y V + W V V+ P+ RG A G V + +V+++ L+
Sbjct: 342 VVFLGV-YIVFYQATWGPVVWVLMPELFPSKARGAATGFTTLVLSAANLIVSLVFPLMLS 400
Query: 325 KYGFLILEVFFSVWLCITLVLIVLLYLWDVQNGGKLNESGPSRRKKLKKSEYNVSETMDK 504
G + + FSV +C+ L Y+ G L E S +K+ KK + ++ +++
Sbjct: 401 AMGIAWVFMVFSV-ICL-LSFFFAFYMVPETKGKSLEEIEASLKKRFKKKKSTQNQVLNE 458
>sp|P76628|YGAY_ECOLI Hypothetical protein ygaY
Length = 394
Score = 36.6 bits (83), Expect = 0.054
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Frame = +1
Query: 160 MIFLGVS----YSVLASSLWPMVALVIPAHQRGTAFGIMQSVQNLGLAVVAIIAGLIQDK 327
M+ LG + +SV+A L P+ A + +RG G + S LG+ + +AGL+ +
Sbjct: 101 MMILGTALTGLFSVVAQILVPLAATLASPDKRGKVVGTIMSGLLLGILLARTVAGLLANL 160
Query: 328 YGFLILEVFFSVWLCITLVLIVLLYLW 408
G+ + W+ L+ ++ L LW
Sbjct: 161 GGWRTV-----FWVASVLMALMALALW 182
>sp|Q8X4V6|YGAY_ECO57 Hypothetical protein ygaY
Length = 394
Score = 36.6 bits (83), Expect = 0.054
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Frame = +1
Query: 160 MIFLGVS----YSVLASSLWPMVALVIPAHQRGTAFGIMQSVQNLGLAVVAIIAGLIQDK 327
M+ LG + +SV+A L P+ A + +RG G + S LG+ + +AGL+ +
Sbjct: 101 MMILGTALTGLFSVVAQILVPLAATLASPDKRGKVVGTIMSGLLLGILLARTVAGLLANL 160
Query: 328 YGFLILEVFFSVWLCITLVLIVLLYLW 408
G+ + W+ L+ ++ L LW
Sbjct: 161 GGWRTV-----FWVASVLMALMALALW 182
>sp|Q8Z4Z9|YFCJ_SALTI Hypothetical UPF0226 protein yfcJ
Length = 392
Score = 35.8 bits (81), Expect = 0.092
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +1
Query: 172 GVSYSVLASSLWPMVALVIPAHQRGTAFGIMQSVQNLGLAVVAIIAGLIQDKYGF 336
G S++ S+L V +PA RGTA G + Q++ V +AG++ YG+
Sbjct: 313 GAGCSLIFSALGVEVVKRVPAQVRGTALGGYAAFQDISYGVTGPLAGMLATSYGY 367
>sp|P32369|BAIG_EUBSP Bile acid transporter
Length = 477
Score = 35.8 bits (81), Expect = 0.092
Identities = 17/83 (20%), Positives = 38/83 (45%)
Frame = +1
Query: 151 LGVMIFLGVSYSVLASSLWPMVALVIPAHQRGTAFGIMQSVQNLGLAVVAIIAGLIQDKY 330
L +G+ + ++ + + P + G AFG+ + + + V GLI +
Sbjct: 103 LAARFIVGIGTAAISPIVMAYIVTEYPQEETGKAFGLYMLISSGAVVVGPTCGGLIMNAA 162
Query: 331 GFLILEVFFSVWLCITLVLIVLL 399
G+ ++ +W+C+ L ++V L
Sbjct: 163 GWRVM-----MWVCVALCVVVFL 180
>sp|Q92EE1|LMRB_LISIN Lincomycin resistance protein lmrB
Length = 471
Score = 35.4 bits (80), Expect = 0.12
Identities = 24/89 (26%), Positives = 44/89 (49%)
Frame = +1
Query: 136 TFANPLGVMIFLGVSYSVLASSLWPMVALVIPAHQRGTAFGIMQSVQNLGLAVVAIIAGL 315
TFA + + V ++L ++ + L+ P H+RG+A G++ V AV I+GL
Sbjct: 102 TFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGL 161
Query: 316 IQDKYGFLILEVFFSVWLCITLVLIVLLY 402
I + L + W+ + ++I LL+
Sbjct: 162 ILEN-----LTWNWIFWISLPFLIIALLF 185
>sp|Q8Y9K8|LMRB_LISMO Lincomycin resistance protein lmrB
Length = 471
Score = 35.4 bits (80), Expect = 0.12
Identities = 24/89 (26%), Positives = 44/89 (49%)
Frame = +1
Query: 136 TFANPLGVMIFLGVSYSVLASSLWPMVALVIPAHQRGTAFGIMQSVQNLGLAVVAIIAGL 315
TFA + + V ++L ++ + L+ P H+RG+A G++ V AV I+GL
Sbjct: 102 TFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGL 161
Query: 316 IQDKYGFLILEVFFSVWLCITLVLIVLLY 402
I + L + W+ + ++I LL+
Sbjct: 162 ILEN-----LTWNWIFWISLPFLIIALLF 185
>sp|Q8ZNB8|YFCJ_SALTY Hypothetical UPF0226 protein yfcJ
Length = 392
Score = 33.9 bits (76), Expect = 0.35
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 172 GVSYSVLASSLWPMVALVIPAHQRGTAFGIMQSVQNLGLAVVAIIAGLIQDKYGF 336
G S++ +L V +PA RGTA G + Q++ V +AG++ YG+
Sbjct: 313 GAGCSLIFPALGVEVVKRVPAQVRGTALGGYAAFQDISYGVTGPLAGMLATSYGY 367
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,434,069
Number of Sequences: 369166
Number of extensions: 1313339
Number of successful extensions: 3294
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3291
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4974853140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)