Planarian EST Database


Dr_sW_001_L03

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_001_L03
         (842 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P47234|LACY_CITFR  Lactose permease (Lactose-proton symport)    39   0.023
sp|P46907|NARK_BACSU  Nitrite extrusion protein (Nitrite fac...    38   0.031
sp|P77249|SFMC_ECOLI  Chaperone protein sfmC precursor             32   2.2  
sp|P45108|CVPA_HAEIN  Colicin V production protein homolog         31   3.7  
sp|Q5U820|CFTR_CANFA  Cystic fibrosis transmembrane conducta...    31   3.7  
sp|Q6BN11|MCH1_DEBHA  Probable transporter MCH1                    31   4.9  
sp|P46537|CARB_BACCL  Carbamoyl-phosphate synthase pyrimidin...    30   6.4  
sp|P06428|VE6_HPV08  Protein E6                                    30   6.4  
sp|Q92C68|Y1323_LISIN  Hypothetical UPF0078 membrane protein...    30   6.4  
sp|Q9HFW3|TRF5_ASHGO  Topoisomerase 1-related protein TRF5         30   6.4  
>sp|P47234|LACY_CITFR Lactose permease (Lactose-proton symport)
          Length = 416

 Score = 38.5 bits (88), Expect = 0.023
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
 Frame = +3

Query: 576 FWIISGICVAYYVAVFPFVSLSKVFLIQKYGLNGADAALITSLLYIVSAACSPVMGFLID 755
           FW+       Y+  +  +     ++L +   ++  D  +I + + + S    P+ G L D
Sbjct: 9   FWMFGFFFFFYFFIMGAYFPFFPIWLHEVNHISKGDTGIIFACISLFSLLFQPIFGLLSD 68

Query: 756 LTG--RNLFWVLTGTLATLGSHALYAF 830
             G  ++L WV+TG L       +Y F
Sbjct: 69  KLGLRKHLLWVITGMLVMFAPFFIYVF 95
>sp|P46907|NARK_BACSU Nitrite extrusion protein (Nitrite facilitator)
          Length = 395

 Score = 38.1 bits (87), Expect = 0.031
 Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +3

Query: 579 WIISGICVAYYVAVFPFVSLSKVFLIQKYGLNGADAALITSLLYIVSAACSPVMGFLIDL 758
           W +S      + A   F      FL++ +GLN ADA L T+    VS    P  GFL D 
Sbjct: 205 WFLSLFYFITFGAFVAFTIYLPNFLVEHFGLNPADAGLRTAGFIAVSTLLRPAGGFLADK 264

Query: 759 TG--RNLFWVLTG 791
               R L +V TG
Sbjct: 265 MSPLRILMFVFTG 277
>sp|P77249|SFMC_ECOLI Chaperone protein sfmC precursor
          Length = 230

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +3

Query: 315 LSMSRIGSTVNLNSMTPIYESLSEINIGHKRLGTAL 422
           L  SR G+ +N+++ +P Y +L  + +G ++LG A+
Sbjct: 156 LKFSRSGNYINVHNPSPFYVTLVNLQVGSQKLGNAM 191
>sp|P45108|CVPA_HAEIN Colicin V production protein homolog
          Length = 163

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 23/82 (28%), Positives = 40/82 (48%)
 Frame = +3

Query: 567 SVAFWIISGICVAYYVAVFPFVSLSKVFLIQKYGLNGADAALITSLLYIVSAACSPVMGF 746
           S+  WI++ I  + +   +P+++     +   Y  NG   A++  L  IV A  + V+  
Sbjct: 28  SLGSWIVAFIVASQF---YPYLAAYLTQIESMYIRNGTAIAILFVLTLIVGAIVNYVISQ 84

Query: 747 LIDLTGRNLFWVLTGTLATLGS 812
           L+D TG      L+GT   LG+
Sbjct: 85  LVDKTG------LSGTDRVLGA 100
>sp|Q5U820|CFTR_CANFA Cystic fibrosis transmembrane conductance regulator (CFTR)
           (cAMP-dependent chloride channel)
          Length = 1483

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
 Frame = +3

Query: 468 VLAMFDRRAERILQRNKKNSEDEKISLGDIRHFSVAFWIISGICVAYYVAVFPFVSLSKV 647
           V A ++     +L++ K+NS D KIS GD   F   F ++          V   ++  K+
Sbjct: 397 VTAFWEEGFGELLEKAKENSNDRKISNGDNSLFFSNFSLLG-------TPVLKDINF-KI 448

Query: 648 FLIQKYGLNGADAALITSLLYIVSAACSPVMGFLIDLTGRNLF-----WVLTGTL 797
              Q   + G+  A  TSLL ++     P  G  I  +GR  F     W++ GT+
Sbjct: 449 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG-KIKHSGRISFCSQFSWIMPGTI 502
>sp|Q6BN11|MCH1_DEBHA Probable transporter MCH1
          Length = 486

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
 Frame = +3

Query: 600 VAYYVAVFPFVSLSKVFLI--------QKYGLNGADAALITSLLYIVSAACSPVMGFLID 755
           +++++++F  ++   + L         + YG+N      I SL  I    C PV+G+L D
Sbjct: 31  ISFFISLFSCLTSGSIMLFSLFSSSLHELYGINYLHINFIASLSAIGMYLCLPVLGYLAD 90

Query: 756 LTGRNL 773
             G +L
Sbjct: 91  CYGPSL 96
>sp|P46537|CARB_BACCL Carbamoyl-phosphate synthase pyrimidine-specific large chain
           (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1065

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -3

Query: 681 LLRLNHIFGSKILSIVKQRGKLQHNKQHKFQILSKMPQKNDEY 553
           L+R +++ G + + IV  RG+L H  +H  ++  + P   D Y
Sbjct: 705 LVRPSYVLGGRAMEIVYNRGELLHYMEHAVRVNPQHPVLVDRY 747
>sp|P06428|VE6_HPV08 Protein E6
          Length = 155

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +2

Query: 668 FKRSRCCI---NYKFTLYCFCCLQSSNGFSH*SYWKKFILGAD 787
           F + R C+   NY  T  C CC  ++  F    Y+++ +LG D
Sbjct: 54  FDKKRLCLIWKNYVVTACCRCCCVATATFEFNEYYEQTVLGRD 96
>sp|Q92C68|Y1323_LISIN Hypothetical UPF0078 membrane protein lin1323
          Length = 198

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 675 GADAALITSLLYIVSAACSPVMGFLIDLTGRNLFWVLTGTLATLG-SHALYA 827
           G  A  I +++ I+    + ++ F   L   + FW+LTG  A +G S  L+A
Sbjct: 51  GVKAGSIVTVMDILKGTVATLLPFFFQLNVNHHFWLLTGAFAIIGHSFPLFA 102
>sp|Q9HFW3|TRF5_ASHGO Topoisomerase 1-related protein TRF5
          Length = 626

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 666 HIFGSKIL-SIVKQRGKLQHNKQHKFQILSKMPQKNDEYHQ 547
           H  G  IL +++K RG  +  K  +  I++K  Q+N+E+HQ
Sbjct: 485 HRVGKSILGNVIKYRGAKRDFKDERALIVNKAIQENEEFHQ 525
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,374,464
Number of Sequences: 369166
Number of extensions: 1843029
Number of successful extensions: 5549
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5547
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8245425915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)