Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_001_L03 (842 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P47234|LACY_CITFR Lactose permease (Lactose-proton symport) 39 0.023 sp|P46907|NARK_BACSU Nitrite extrusion protein (Nitrite fac... 38 0.031 sp|P77249|SFMC_ECOLI Chaperone protein sfmC precursor 32 2.2 sp|P45108|CVPA_HAEIN Colicin V production protein homolog 31 3.7 sp|Q5U820|CFTR_CANFA Cystic fibrosis transmembrane conducta... 31 3.7 sp|Q6BN11|MCH1_DEBHA Probable transporter MCH1 31 4.9 sp|P46537|CARB_BACCL Carbamoyl-phosphate synthase pyrimidin... 30 6.4 sp|P06428|VE6_HPV08 Protein E6 30 6.4 sp|Q92C68|Y1323_LISIN Hypothetical UPF0078 membrane protein... 30 6.4 sp|Q9HFW3|TRF5_ASHGO Topoisomerase 1-related protein TRF5 30 6.4
>sp|P47234|LACY_CITFR Lactose permease (Lactose-proton symport) Length = 416 Score = 38.5 bits (88), Expect = 0.023 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 2/87 (2%) Frame = +3 Query: 576 FWIISGICVAYYVAVFPFVSLSKVFLIQKYGLNGADAALITSLLYIVSAACSPVMGFLID 755 FW+ Y+ + + ++L + ++ D +I + + + S P+ G L D Sbjct: 9 FWMFGFFFFFYFFIMGAYFPFFPIWLHEVNHISKGDTGIIFACISLFSLLFQPIFGLLSD 68 Query: 756 LTG--RNLFWVLTGTLATLGSHALYAF 830 G ++L WV+TG L +Y F Sbjct: 69 KLGLRKHLLWVITGMLVMFAPFFIYVF 95
>sp|P46907|NARK_BACSU Nitrite extrusion protein (Nitrite facilitator) Length = 395 Score = 38.1 bits (87), Expect = 0.031 Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Frame = +3 Query: 579 WIISGICVAYYVAVFPFVSLSKVFLIQKYGLNGADAALITSLLYIVSAACSPVMGFLIDL 758 W +S + A F FL++ +GLN ADA L T+ VS P GFL D Sbjct: 205 WFLSLFYFITFGAFVAFTIYLPNFLVEHFGLNPADAGLRTAGFIAVSTLLRPAGGFLADK 264 Query: 759 TG--RNLFWVLTG 791 R L +V TG Sbjct: 265 MSPLRILMFVFTG 277
>sp|P77249|SFMC_ECOLI Chaperone protein sfmC precursor Length = 230 Score = 32.0 bits (71), Expect = 2.2 Identities = 12/36 (33%), Positives = 24/36 (66%) Frame = +3 Query: 315 LSMSRIGSTVNLNSMTPIYESLSEINIGHKRLGTAL 422 L SR G+ +N+++ +P Y +L + +G ++LG A+ Sbjct: 156 LKFSRSGNYINVHNPSPFYVTLVNLQVGSQKLGNAM 191
>sp|P45108|CVPA_HAEIN Colicin V production protein homolog Length = 163 Score = 31.2 bits (69), Expect = 3.7 Identities = 23/82 (28%), Positives = 40/82 (48%) Frame = +3 Query: 567 SVAFWIISGICVAYYVAVFPFVSLSKVFLIQKYGLNGADAALITSLLYIVSAACSPVMGF 746 S+ WI++ I + + +P+++ + Y NG A++ L IV A + V+ Sbjct: 28 SLGSWIVAFIVASQF---YPYLAAYLTQIESMYIRNGTAIAILFVLTLIVGAIVNYVISQ 84 Query: 747 LIDLTGRNLFWVLTGTLATLGS 812 L+D TG L+GT LG+ Sbjct: 85 LVDKTG------LSGTDRVLGA 100
>sp|Q5U820|CFTR_CANFA Cystic fibrosis transmembrane conductance regulator (CFTR) (cAMP-dependent chloride channel) Length = 1483 Score = 31.2 bits (69), Expect = 3.7 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 5/115 (4%) Frame = +3 Query: 468 VLAMFDRRAERILQRNKKNSEDEKISLGDIRHFSVAFWIISGICVAYYVAVFPFVSLSKV 647 V A ++ +L++ K+NS D KIS GD F F ++ V ++ K+ Sbjct: 397 VTAFWEEGFGELLEKAKENSNDRKISNGDNSLFFSNFSLLG-------TPVLKDINF-KI 448 Query: 648 FLIQKYGLNGADAALITSLLYIVSAACSPVMGFLIDLTGRNLF-----WVLTGTL 797 Q + G+ A TSLL ++ P G I +GR F W++ GT+ Sbjct: 449 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG-KIKHSGRISFCSQFSWIMPGTI 502
>sp|Q6BN11|MCH1_DEBHA Probable transporter MCH1 Length = 486 Score = 30.8 bits (68), Expect = 4.9 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 8/66 (12%) Frame = +3 Query: 600 VAYYVAVFPFVSLSKVFLI--------QKYGLNGADAALITSLLYIVSAACSPVMGFLID 755 +++++++F ++ + L + YG+N I SL I C PV+G+L D Sbjct: 31 ISFFISLFSCLTSGSIMLFSLFSSSLHELYGINYLHINFIASLSAIGMYLCLPVLGYLAD 90 Query: 756 LTGRNL 773 G +L Sbjct: 91 CYGPSL 96
>sp|P46537|CARB_BACCL Carbamoyl-phosphate synthase pyrimidine-specific large chain (Carbamoyl-phosphate synthetase ammonia chain) Length = 1065 Score = 30.4 bits (67), Expect = 6.4 Identities = 13/43 (30%), Positives = 24/43 (55%) Frame = -3 Query: 681 LLRLNHIFGSKILSIVKQRGKLQHNKQHKFQILSKMPQKNDEY 553 L+R +++ G + + IV RG+L H +H ++ + P D Y Sbjct: 705 LVRPSYVLGGRAMEIVYNRGELLHYMEHAVRVNPQHPVLVDRY 747
>sp|P06428|VE6_HPV08 Protein E6 Length = 155 Score = 30.4 bits (67), Expect = 6.4 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Frame = +2 Query: 668 FKRSRCCI---NYKFTLYCFCCLQSSNGFSH*SYWKKFILGAD 787 F + R C+ NY T C CC ++ F Y+++ +LG D Sbjct: 54 FDKKRLCLIWKNYVVTACCRCCCVATATFEFNEYYEQTVLGRD 96
>sp|Q92C68|Y1323_LISIN Hypothetical UPF0078 membrane protein lin1323 Length = 198 Score = 30.4 bits (67), Expect = 6.4 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = +3 Query: 675 GADAALITSLLYIVSAACSPVMGFLIDLTGRNLFWVLTGTLATLG-SHALYA 827 G A I +++ I+ + ++ F L + FW+LTG A +G S L+A Sbjct: 51 GVKAGSIVTVMDILKGTVATLLPFFFQLNVNHHFWLLTGAFAIIGHSFPLFA 102
>sp|Q9HFW3|TRF5_ASHGO Topoisomerase 1-related protein TRF5 Length = 626 Score = 30.4 bits (67), Expect = 6.4 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Frame = -3 Query: 666 HIFGSKIL-SIVKQRGKLQHNKQHKFQILSKMPQKNDEYHQ 547 H G IL +++K RG + K + I++K Q+N+E+HQ Sbjct: 485 HRVGKSILGNVIKYRGAKRDFKDERALIVNKAIQENEEFHQ 525
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,374,464 Number of Sequences: 369166 Number of extensions: 1843029 Number of successful extensions: 5549 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 5354 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5547 length of database: 68,354,980 effective HSP length: 109 effective length of database: 48,218,865 effective search space used: 8245425915 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)