Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_M10
(794 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46907|NARK_BACSU Nitrite extrusion protein (Nitrite fac... 36 0.14
sp|P77249|SFMC_ECOLI Chaperone protein sfmC precursor 32 2.0
sp|Q6BN11|MCH1_DEBHA Probable transporter MCH1 31 4.4
sp|P46537|CARB_BACCL Carbamoyl-phosphate synthase pyrimidin... 30 5.8
sp|Q9HFW3|TRF5_ASHGO Topoisomerase 1-related protein TRF5 30 5.8
sp|P25473|CLUS_CANFA Clusterin precursor (Glycoprotein 80) ... 30 7.6
sp|O18635|C12A2_MUSDO Cytochrome P450 CYP12A2 (CYPXIIA2) 30 7.6
sp|Q5TM64|CF136_MACMU Protein C6orf136 homolog 30 9.9
>sp|P46907|NARK_BACSU Nitrite extrusion protein (Nitrite facilitator)
Length = 395
Score = 35.8 bits (81), Expect = 0.14
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = +3
Query: 540 WIISGICVAYYVAVFPFVSLSKVFLIQKYGLNGADAALITSLLYIVSAACSPVMGFLID 716
W +S + A F FL++ +GLN ADA L T+ VS P GFL D
Sbjct: 205 WFLSLFYFITFGAFVAFTIYLPNFLVEHFGLNPADAGLRTAGFIAVSTLLRPAGGFLAD 263
>sp|P77249|SFMC_ECOLI Chaperone protein sfmC precursor
Length = 230
Score = 32.0 bits (71), Expect = 2.0
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +3
Query: 276 LSMSRIGSTVNLNSMTPIYESLSEINIGHKRLGTAL 383
L SR G+ +N+++ +P Y +L + +G ++LG A+
Sbjct: 156 LKFSRSGNYINVHNPSPFYVTLVNLQVGSQKLGNAM 191
>sp|Q6BN11|MCH1_DEBHA Probable transporter MCH1
Length = 486
Score = 30.8 bits (68), Expect = 4.4
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Frame = +3
Query: 561 VAYYVAVFPFVSLSKVFLI--------QKYGLNGADAALITSLLYIVSAACSPVMGFLID 716
+++++++F ++ + L + YG+N I SL I C PV+G+L D
Sbjct: 31 ISFFISLFSCLTSGSIMLFSLFSSSLHELYGINYLHINFIASLSAIGMYLCLPVLGYLAD 90
Query: 717 LTGRNL 734
G +L
Sbjct: 91 CYGPSL 96
>sp|P46537|CARB_BACCL Carbamoyl-phosphate synthase pyrimidine-specific large chain
(Carbamoyl-phosphate synthetase ammonia chain)
Length = 1065
Score = 30.4 bits (67), Expect = 5.8
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -3
Query: 642 LLRLNHIFGSKILSIVKQRGKLQHNKQHKFQILSKMPQKNDEY 514
L+R +++ G + + IV RG+L H +H ++ + P D Y
Sbjct: 705 LVRPSYVLGGRAMEIVYNRGELLHYMEHAVRVNPQHPVLVDRY 747
>sp|Q9HFW3|TRF5_ASHGO Topoisomerase 1-related protein TRF5
Length = 626
Score = 30.4 bits (67), Expect = 5.8
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -3
Query: 627 HIFGSKIL-SIVKQRGKLQHNKQHKFQILSKMPQKNDEYHQ 508
H G IL +++K RG + K + I++K Q+N+E+HQ
Sbjct: 485 HRVGKSILGNVIKYRGAKRDFKDERALIVNKAIQENEEFHQ 525
>sp|P25473|CLUS_CANFA Clusterin precursor (Glycoprotein 80) (Gp80)
Length = 445
Score = 30.0 bits (66), Expect = 7.6
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = -3
Query: 552 QILSKMPQKNDEYHQEIFSRLPNSFCFSEEFVRLYDQTSLKRERKSMKTHKSMQQ*TKRF 373
+ILS N+ ++ L NS +E+F +LYD+ + K T ++Q ++F
Sbjct: 303 EILSVDCSSNNPAQVQLRQELSNSLQIAEKFTKLYDELLQSYQEKMFNTSSLLKQLNEQF 362
>sp|O18635|C12A2_MUSDO Cytochrome P450 CYP12A2 (CYPXIIA2)
Length = 537
Score = 30.0 bits (66), Expect = 7.6
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = -3
Query: 576 QHNKQHKFQILSKMPQKNDEYHQEIFSRLPNSFCFSEEFVRLYDQT 439
+ K+ + +I+ +PQK+ E+++ +F +P +E +R+Y T
Sbjct: 354 EKQKKLREEIMQLLPQKDSEFNEAVFKNMPYLRACIKESLRVYPLT 399
>sp|Q5TM64|CF136_MACMU Protein C6orf136 homolog
Length = 172
Score = 29.6 bits (65), Expect = 9.9
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 83 NYFLNIRTR-RTNYICWRRFCRFILFECFWQIRI 181
N LNIRT+ RT YI CRF+ + F Q+R+
Sbjct: 37 NEILNIRTKGRTWYILSLTLCRFLAWNYFSQLRL 70
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,889,355
Number of Sequences: 369166
Number of extensions: 1721718
Number of successful extensions: 5201
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5199
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7473924075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)