Planaria EST Database

DrC_01010

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01010
         (990 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LKA5|UMP1_ARATH  Unknown mitochondrial protein At3g15000      40   0.010
sp|Q09442|YP85_CAEEL  Hypothetical RNA-binding protein C08B1...    35   0.25 
sp|P81489|PRPP_HUMAN  Salivary proline-rich protein II-1           35   0.25 
sp|Q96EP5|DAZP1_HUMAN  DAZ-associated protein 1 (Deleted in ...    34   0.73 
sp|Q9JII5|DAZP1_MOUSE  DAZ-associated protein 1 (Deleted in ...    34   0.73 
sp|P38486|LEG3_CANFA  Galectin-3 (Galactose-specific lectin ...    34   0.73 
sp|P22357|ASF1_HELAN  Anther-specific protein SF18 precursor       33   1.2  
sp|P63162|RSMN_HUMAN  Small nuclear ribonucleoprotein associ...    33   1.2  
sp|Q99935|PROL1_HUMAN  Proline-rich protein 1 precursor (PRL...    33   1.2  
sp|P41467|Y066_NPVAC  HYPOTHETICAL 94.0 KD PROTEIN IN POL-LE...    33   1.6  

>sp|Q9LKA5|UMP1_ARATH Unknown mitochondrial protein At3g15000
          Length = 395

 Score = 40.0 bits (92), Expect = 0.010
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 473 PNINGSPDASAPNVGYPGEAPPPPGFRQEYGPPPPYE-SAHRYKGPHSAGATNS 631
           P+I GS     P++G  G APPPP   Q YGPPPP      R+  P+ A   N+
Sbjct: 255 PHIGGSAPPP-PHMG--GSAPPPPHMGQNYGPPPPNNMGGPRHPPPYGAPPQNN 305

>sp|Q09442|YP85_CAEEL Hypothetical RNA-binding protein C08B11.5 in chromosome II
          Length = 388

 Score = 35.4 bits (80), Expect = 0.25
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
 Frame = +2

Query: 473 PNINGSPDASAPNVGYPGEAPPPPGFRQE------YGPPPP 577
           P + G P    P + YPG  PPPP  R        Y PPPP
Sbjct: 328 PGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPP 368


 Score = 32.0 bits (71), Expect = 2.8
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
 Frame = +2

Query: 473 PNINGSPDASAPN-VGYPGEA----PPPPGFRQEYGPPPPYESAHRYKGP 607
           P + G P    P+  G PG      PPPPG R   G PPP    +   GP
Sbjct: 311 PGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGP 360

>sp|P81489|PRPP_HUMAN Salivary proline-rich protein II-1
          Length = 174

 Score = 35.4 bits (80), Expect = 0.25
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 470 SPNINGSPDASAPNVGYPG--EAPPPPGFRQEYGPPPP 577
           +P   G P+   P  G PG  E PPP G  Q + PPPP
Sbjct: 97  TPPPPGKPEGRPPQQGGPGKPERPPPQGGDQSHRPPPP 134


 Score = 31.6 bits (70), Expect = 3.6
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +2

Query: 473 PNINGSPDASAPNVGYPGEAPPPPGFRQEYGPPPP 577
           P     P    P  G P + PPP G  Q  GPPPP
Sbjct: 24  PQGGNQPQRPPPPPGKP-QGPPPQGGDQSQGPPPP 57

>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 (Deleted in azoospermia-associated protein
           1)
          Length = 407

 Score = 33.9 bits (76), Expect = 0.73
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
 Frame = +2

Query: 473 PNINGSPDASAPNVGY-----PGEAPPPPGFRQEYGPPPPY 580
           P   G+P    P   Y     PG  PPP GF Q YG PP +
Sbjct: 250 PAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQF 290

>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 (Deleted in azoospermia-associated protein
           1)
          Length = 406

 Score = 33.9 bits (76), Expect = 0.73
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
 Frame = +2

Query: 473 PNINGSPDASAPNVGY-----PGEAPPPPGFRQEYGPPPPY 580
           P   G+P    P   Y     PG  PPP GF Q YG PP +
Sbjct: 250 PAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQF 290

>sp|P38486|LEG3_CANFA Galectin-3 (Galactose-specific lectin 3) (Mac-2 antigen)
           (IgE-binding protein) (35 kDa lectin) (Carbohydrate
           binding protein 35) (CBP 35) (Laminin-binding protein)
           (Lectin L-29)
          Length = 296

 Score = 33.9 bits (76), Expect = 0.73
 Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
 Frame = +2

Query: 485 GSPDASAPNVGYPGEAPP-------PPGFRQEYGPPPPY--ESAHRYKGPHSAG 619
           G     AP  GYPG+APP       PPG      PP  Y   +A  Y GP + G
Sbjct: 70  GGYPGQAPPGGYPGQAPPGGYPGQAPPGGYPGQAPPGTYPGPTAPAYPGPTAPG 123

>sp|P22357|ASF1_HELAN Anther-specific protein SF18 precursor
          Length = 161

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 19/46 (41%), Positives = 21/46 (45%)
 Frame = +2

Query: 440 VCFVLYYFCISPNINGSPDASAPNVGYPGEAPPPPGFRQEYGPPPP 577
           +CF   YF   P  N  P   AP  G PG  P PPG  +   P PP
Sbjct: 58  MCFC--YFDCDPQKNPGPPPGAP--GTPGTPPAPPGKGEGDAPHPP 99

>sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm
           protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing
           protein)
 sp|P63164|RSMN_RAT Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm
           protein N) (Sm-N) (SmN) (Sm-D)
 sp|P63163|RSMN_MOUSE Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm
           protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing
           protein)
          Length = 240

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 485 GSPDASAPNVGYP--GEAPPPPGFRQEYGPPPP 577
           G P A    +G P  G  PPPPG R   GPPPP
Sbjct: 204 GLPPARGTPIGMPPPGMRPPPPGIR---GPPPP 233

>sp|Q99935|PROL1_HUMAN Proline-rich protein 1 precursor (PRL1) (Basic proline-rich
           lacrimal protein)
          Length = 201

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
 Frame = +2

Query: 521 PGEAPPPPGFRQEY---GPPPPYES 586
           PG+ PPPP +R  +    PPPPY+S
Sbjct: 31  PGQLPPPPLYRPRWVPPSPPPPYDS 55

>sp|P41467|Y066_NPVAC HYPOTHETICAL 94.0 KD PROTEIN IN POL-LEF3 INTERGENIC REGION
          Length = 808

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 467 ISPNINGSPDASAPNVGYPGEAPPPPGFRQEYGPPPPYESAHRYKGPH 610
           ++ NIN   D + P    P   PPPP  +    P PPY + + Y  P+
Sbjct: 84  LTHNINYKYDYNYPPAPVPAMQPPPPPPQPPAPPQPPYYNNYPYYPPY 131

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,855,939
Number of Sequences: 369166
Number of extensions: 2530619
Number of successful extensions: 10090
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9406
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10431168110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01010

  1. Dr_sW_023_B06
  2. Dr_sW_025_I03
  3. Dr_sW_001_B06
  4. Dr_sW_018_C09
  5. Dr_sW_026_G21
  6. Dr_sW_006_I09
  7. Dr_sW_018_A09