Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_C09
(629 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9LKA5|UMP1_ARATH Unknown mitochondrial protein At3g15000 40 0.005
sp|Q09442|YP85_CAEEL Hypothetical RNA-binding protein C08B1... 35 0.12
sp|P81489|PRPP_HUMAN Salivary proline-rich protein II-1 35 0.12
sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 (Deleted in ... 34 0.35
sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 (Deleted in ... 34 0.35
sp|P38486|LEG3_CANFA Galectin-3 (Galactose-specific lectin ... 34 0.35
sp|P22357|ASF1_HELAN Anther-specific protein SF18 precursor 33 0.60
sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein associ... 33 0.60
sp|Q99935|PROL1_HUMAN Proline-rich protein 1 precursor (PRL... 33 0.60
sp|P41467|Y066_NPVAC HYPOTHETICAL 94.0 KD PROTEIN IN POL-LE... 33 0.78
>sp|Q9LKA5|UMP1_ARATH Unknown mitochondrial protein At3g15000
Length = 395
Score = 40.0 bits (92), Expect = 0.005
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 112 PNINGSPDASAPNVGYPGEAPPPPGFRQEYGPPPPYE-SAHRYKGPHSAGATNS 270
P+I GS P++G G APPPP Q YGPPPP R+ P+ A N+
Sbjct: 255 PHIGGSAPPP-PHMG--GSAPPPPHMGQNYGPPPPNNMGGPRHPPPYGAPPQNN 305
>sp|Q09442|YP85_CAEEL Hypothetical RNA-binding protein C08B11.5 in chromosome II
Length = 388
Score = 35.4 bits (80), Expect = 0.12
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Frame = +1
Query: 112 PNINGSPDASAPNVGYPGEAPPPPGFRQE------YGPPPP 216
P + G P P + YPG PPPP R Y PPPP
Sbjct: 328 PGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPP 368
Score = 32.0 bits (71), Expect = 1.3
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Frame = +1
Query: 112 PNINGSPDASAPN-VGYPGEA----PPPPGFRQEYGPPPPYESAHRYKGP 246
P + G P P+ G PG PPPPG R G PPP + GP
Sbjct: 311 PGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGP 360
>sp|P81489|PRPP_HUMAN Salivary proline-rich protein II-1
Length = 174
Score = 35.4 bits (80), Expect = 0.12
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +1
Query: 109 SPNINGSPDASAPNVGYPG--EAPPPPGFRQEYGPPPP 216
+P G P+ P G PG E PPP G Q + PPPP
Sbjct: 97 TPPPPGKPEGRPPQQGGPGKPERPPPQGGDQSHRPPPP 134
Score = 31.6 bits (70), Expect = 1.7
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +1
Query: 112 PNINGSPDASAPNVGYPGEAPPPPGFRQEYGPPPP 216
P P P G P + PPP G Q GPPPP
Sbjct: 24 PQGGNQPQRPPPPPGKP-QGPPPQGGDQSQGPPPP 57
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 (Deleted in azoospermia-associated protein
1)
Length = 407
Score = 33.9 bits (76), Expect = 0.35
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Frame = +1
Query: 112 PNINGSPDASAPNVGY-----PGEAPPPPGFRQEYGPPPPY 219
P G+P P Y PG PPP GF Q YG PP +
Sbjct: 250 PAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQF 290
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 (Deleted in azoospermia-associated protein
1)
Length = 406
Score = 33.9 bits (76), Expect = 0.35
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Frame = +1
Query: 112 PNINGSPDASAPNVGY-----PGEAPPPPGFRQEYGPPPPY 219
P G+P P Y PG PPP GF Q YG PP +
Sbjct: 250 PAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQF 290
>sp|P38486|LEG3_CANFA Galectin-3 (Galactose-specific lectin 3) (Mac-2 antigen)
(IgE-binding protein) (35 kDa lectin) (Carbohydrate
binding protein 35) (CBP 35) (Laminin-binding protein)
(Lectin L-29)
Length = 296
Score = 33.9 bits (76), Expect = 0.35
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Frame = +1
Query: 124 GSPDASAPNVGYPGEAPP-------PPGFRQEYGPPPPY--ESAHRYKGPHSAG 258
G AP GYPG+APP PPG PP Y +A Y GP + G
Sbjct: 70 GGYPGQAPPGGYPGQAPPGGYPGQAPPGGYPGQAPPGTYPGPTAPAYPGPTAPG 123
Score = 29.6 bits (65), Expect = 6.6
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Frame = +1
Query: 124 GSPDASAPNVGYPGEAPP-------PPGFRQEYGPPPPY 219
G+ AP GYPG+APP PPG PP Y
Sbjct: 43 GAYPGQAPPGGYPGQAPPGGYPGQAPPGGYPGQAPPGGY 81
>sp|P22357|ASF1_HELAN Anther-specific protein SF18 precursor
Length = 161
Score = 33.1 bits (74), Expect = 0.60
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = +1
Query: 79 VCFVLYYFCISPNINGSPDASAPNVGYPGEAPPPPGFRQEYGPPPP 216
+CF YF P N P AP G PG P PPG + P PP
Sbjct: 58 MCFC--YFDCDPQKNPGPPPGAP--GTPGTPPAPPGKGEGDAPHPP 99
>sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm
protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing
protein)
sp|P63164|RSMN_RAT Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm
protein N) (Sm-N) (SmN) (Sm-D)
sp|P63163|RSMN_MOUSE Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm
protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing
protein)
Length = 240
Score = 33.1 bits (74), Expect = 0.60
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 124 GSPDASAPNVGYP--GEAPPPPGFRQEYGPPPP 216
G P A +G P G PPPPG R GPPPP
Sbjct: 204 GLPPARGTPIGMPPPGMRPPPPGIR---GPPPP 233
>sp|Q99935|PROL1_HUMAN Proline-rich protein 1 precursor (PRL1) (Basic proline-rich
lacrimal protein)
Length = 201
Score = 33.1 bits (74), Expect = 0.60
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Frame = +1
Query: 160 PGEAPPPPGFRQEY---GPPPPYES 225
PG+ PPPP +R + PPPPY+S
Sbjct: 31 PGQLPPPPLYRPRWVPPSPPPPYDS 55
>sp|P41467|Y066_NPVAC HYPOTHETICAL 94.0 KD PROTEIN IN POL-LEF3 INTERGENIC REGION
Length = 808
Score = 32.7 bits (73), Expect = 0.78
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 106 ISPNINGSPDASAPNVGYPGEAPPPPGFRQEYGPPPPYESAHRYKGPH 249
++ NIN D + P P PPPP + P PPY + + Y P+
Sbjct: 84 LTHNINYKYDYNYPPAPVPAMQPPPPPPQPPAPPQPPYYNNYPYYPPY 131
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,656,276
Number of Sequences: 369166
Number of extensions: 1560627
Number of successful extensions: 7949
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7268
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5023626210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)