Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_006_I09 (482 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q9LKA5|UMP1_ARATH Unknown mitochondrial protein At3g15000 37 0.024 sp|Q99935|PROL1_HUMAN Proline-rich protein 1 precursor (PRL... 33 0.34 sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 (Deleted in ... 32 1.00 sp|P59983|YP90_MYCBO Hypothetical protein Mb2590 32 1.00 sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 (Deleted in ... 32 1.00 sp|Q50738|YP60_MYCTU Hypothetical protein Rv2560/MT2637 32 1.00 sp|P05143|PMP3_MOUSE Proline-rich protein MP-3 32 1.00 sp|P14678|RSMB_HUMAN Small nuclear ribonucleoprotein associ... 31 1.3 sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein associ... 31 1.3 sp|Q9PV94|RSMB_CHICK Small nuclear ribonucleoprotein associ... 31 1.3
>sp|Q9LKA5|UMP1_ARATH Unknown mitochondrial protein At3g15000 Length = 395 Score = 37.0 bits (84), Expect = 0.024 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = +1 Query: 16 GEAPPPPGFRQEYGPPPPYE-SAHRYKGPHSAGATNS 123 G APPPP Q YGPPPP R+ P+ A N+ Sbjct: 269 GSAPPPPHMGQNYGPPPPNNMGGPRHPPPYGAPPQNN 305
>sp|Q99935|PROL1_HUMAN Proline-rich protein 1 precursor (PRL1) (Basic proline-rich lacrimal protein) Length = 201 Score = 33.1 bits (74), Expect = 0.34 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%) Frame = +1 Query: 13 PGEAPPPPGFRQEY---GPPPPYES 78 PG+ PPPP +R + PPPPY+S Sbjct: 31 PGQLPPPPLYRPRWVPPSPPPPYDS 55
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 (Deleted in azoospermia-associated protein 1) Length = 407 Score = 31.6 bits (70), Expect = 1.00 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +1 Query: 13 PGEAPPPPGFRQEYGPPPPY 72 PG PPP GF Q YG PP + Sbjct: 271 PGGFPPPQGFPQGYGAPPQF 290
>sp|P59983|YP90_MYCBO Hypothetical protein Mb2590 Length = 325 Score = 31.6 bits (70), Expect = 1.00 Identities = 13/29 (44%), Positives = 14/29 (48%) Frame = +1 Query: 25 PPPPGFRQEYGPPPPYESAHRYKGPHSAG 111 PPPPG+ GPPPP H S G Sbjct: 54 PPPPGYGPPPGPPPPGYPTHLQSSGFSVG 82
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 (Deleted in azoospermia-associated protein 1) Length = 406 Score = 31.6 bits (70), Expect = 1.00 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +1 Query: 13 PGEAPPPPGFRQEYGPPPPY 72 PG PPP GF Q YG PP + Sbjct: 271 PGGFPPPQGFPQGYGAPPQF 290
>sp|Q50738|YP60_MYCTU Hypothetical protein Rv2560/MT2637 Length = 325 Score = 31.6 bits (70), Expect = 1.00 Identities = 13/29 (44%), Positives = 14/29 (48%) Frame = +1 Query: 25 PPPPGFRQEYGPPPPYESAHRYKGPHSAG 111 PPPPG+ GPPPP H S G Sbjct: 54 PPPPGYGPPPGPPPPGYPTHLQSSGFSVG 82
>sp|P05143|PMP3_MOUSE Proline-rich protein MP-3 Length = 296 Score = 31.6 bits (70), Expect = 1.00 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 4/37 (10%) Frame = +1 Query: 13 PGEAPPPPGF---RQEYGPPPPYESAHR-YKGPHSAG 111 P + PPPPG R GPPPP R +GPH G Sbjct: 236 PPQGPPPPGGPQPRPPQGPPPPTGPQPRPTQGPHPTG 272
Score = 28.5 bits (62), Expect = 8.5 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 3/22 (13%) Frame = +1 Query: 13 PGEAPPPPGFRQE---YGPPPP 69 P + PPPPG Q+ GPPPP Sbjct: 97 PPQGPPPPGGPQQRPPQGPPPP 118
Score = 28.5 bits (62), Expect = 8.5 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 3/22 (13%) Frame = +1 Query: 13 PGEAPPPPGFRQE---YGPPPP 69 P + PPPPG Q+ GPPPP Sbjct: 111 PPQGPPPPGGPQQRPPQGPPPP 132
>sp|P14678|RSMB_HUMAN Small nuclear ribonucleoprotein associated proteins B and B' (snRNP-B) (Sm protein B/B') (Sm-B/Sm-B') (SmB/SmB') Length = 240 Score = 31.2 bits (69), Expect = 1.3 Identities = 13/19 (68%), Positives = 13/19 (68%) Frame = +1 Query: 13 PGEAPPPPGFRQEYGPPPP 69 PG PPPPG R GPPPP Sbjct: 218 PGMRPPPPGMR---GPPPP 233
>sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing protein) sp|P63164|RSMN_RAT Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) sp|P63163|RSMN_MOUSE Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing protein) Length = 240 Score = 31.2 bits (69), Expect = 1.3 Identities = 13/19 (68%), Positives = 13/19 (68%) Frame = +1 Query: 13 PGEAPPPPGFRQEYGPPPP 69 PG PPPPG R GPPPP Sbjct: 218 PGMRPPPPGIR---GPPPP 233
>sp|Q9PV94|RSMB_CHICK Small nuclear ribonucleoprotein associated protein B' (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') Length = 240 Score = 31.2 bits (69), Expect = 1.3 Identities = 13/19 (68%), Positives = 13/19 (68%) Frame = +1 Query: 13 PGEAPPPPGFRQEYGPPPP 69 PG PPPPG R GPPPP Sbjct: 218 PGMRPPPPGMR---GPPPP 233
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,662,925 Number of Sequences: 369166 Number of extensions: 1048502 Number of successful extensions: 5280 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3743 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5041 length of database: 68,354,980 effective HSP length: 102 effective length of database: 49,512,010 effective search space used: 2871696580 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)