Planarian EST Database


Dr_sW_006_I09

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_006_I09
         (482 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LKA5|UMP1_ARATH  Unknown mitochondrial protein At3g15000      37   0.024
sp|Q99935|PROL1_HUMAN  Proline-rich protein 1 precursor (PRL...    33   0.34 
sp|Q96EP5|DAZP1_HUMAN  DAZ-associated protein 1 (Deleted in ...    32   1.00 
sp|P59983|YP90_MYCBO  Hypothetical protein Mb2590                  32   1.00 
sp|Q9JII5|DAZP1_MOUSE  DAZ-associated protein 1 (Deleted in ...    32   1.00 
sp|Q50738|YP60_MYCTU  Hypothetical protein Rv2560/MT2637           32   1.00 
sp|P05143|PMP3_MOUSE  Proline-rich protein MP-3                    32   1.00 
sp|P14678|RSMB_HUMAN  Small nuclear ribonucleoprotein associ...    31   1.3  
sp|P63162|RSMN_HUMAN  Small nuclear ribonucleoprotein associ...    31   1.3  
sp|Q9PV94|RSMB_CHICK  Small nuclear ribonucleoprotein associ...    31   1.3  
>sp|Q9LKA5|UMP1_ARATH Unknown mitochondrial protein At3g15000
          Length = 395

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 16  GEAPPPPGFRQEYGPPPPYE-SAHRYKGPHSAGATNS 123
           G APPPP   Q YGPPPP      R+  P+ A   N+
Sbjct: 269 GSAPPPPHMGQNYGPPPPNNMGGPRHPPPYGAPPQNN 305
>sp|Q99935|PROL1_HUMAN Proline-rich protein 1 precursor (PRL1) (Basic proline-rich
           lacrimal protein)
          Length = 201

 Score = 33.1 bits (74), Expect = 0.34
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
 Frame = +1

Query: 13  PGEAPPPPGFRQEY---GPPPPYES 78
           PG+ PPPP +R  +    PPPPY+S
Sbjct: 31  PGQLPPPPLYRPRWVPPSPPPPYDS 55
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 (Deleted in azoospermia-associated protein
           1)
          Length = 407

 Score = 31.6 bits (70), Expect = 1.00
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 13  PGEAPPPPGFRQEYGPPPPY 72
           PG  PPP GF Q YG PP +
Sbjct: 271 PGGFPPPQGFPQGYGAPPQF 290
>sp|P59983|YP90_MYCBO Hypothetical protein Mb2590
          Length = 325

 Score = 31.6 bits (70), Expect = 1.00
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 25  PPPPGFRQEYGPPPPYESAHRYKGPHSAG 111
           PPPPG+    GPPPP    H      S G
Sbjct: 54  PPPPGYGPPPGPPPPGYPTHLQSSGFSVG 82
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 (Deleted in azoospermia-associated protein
           1)
          Length = 406

 Score = 31.6 bits (70), Expect = 1.00
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 13  PGEAPPPPGFRQEYGPPPPY 72
           PG  PPP GF Q YG PP +
Sbjct: 271 PGGFPPPQGFPQGYGAPPQF 290
>sp|Q50738|YP60_MYCTU Hypothetical protein Rv2560/MT2637
          Length = 325

 Score = 31.6 bits (70), Expect = 1.00
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 25  PPPPGFRQEYGPPPPYESAHRYKGPHSAG 111
           PPPPG+    GPPPP    H      S G
Sbjct: 54  PPPPGYGPPPGPPPPGYPTHLQSSGFSVG 82
>sp|P05143|PMP3_MOUSE Proline-rich protein MP-3
          Length = 296

 Score = 31.6 bits (70), Expect = 1.00
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = +1

Query: 13  PGEAPPPPGF---RQEYGPPPPYESAHR-YKGPHSAG 111
           P + PPPPG    R   GPPPP     R  +GPH  G
Sbjct: 236 PPQGPPPPGGPQPRPPQGPPPPTGPQPRPTQGPHPTG 272

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
 Frame = +1

Query: 13  PGEAPPPPGFRQE---YGPPPP 69
           P + PPPPG  Q+    GPPPP
Sbjct: 97  PPQGPPPPGGPQQRPPQGPPPP 118

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
 Frame = +1

Query: 13  PGEAPPPPGFRQE---YGPPPP 69
           P + PPPPG  Q+    GPPPP
Sbjct: 111 PPQGPPPPGGPQQRPPQGPPPP 132
>sp|P14678|RSMB_HUMAN Small nuclear ribonucleoprotein associated proteins B and B'
           (snRNP-B) (Sm protein B/B') (Sm-B/Sm-B') (SmB/SmB')
          Length = 240

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = +1

Query: 13  PGEAPPPPGFRQEYGPPPP 69
           PG  PPPPG R   GPPPP
Sbjct: 218 PGMRPPPPGMR---GPPPP 233
>sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm
           protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing
           protein)
 sp|P63164|RSMN_RAT Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm
           protein N) (Sm-N) (SmN) (Sm-D)
 sp|P63163|RSMN_MOUSE Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm
           protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing
           protein)
          Length = 240

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = +1

Query: 13  PGEAPPPPGFRQEYGPPPP 69
           PG  PPPPG R   GPPPP
Sbjct: 218 PGMRPPPPGIR---GPPPP 233
>sp|Q9PV94|RSMB_CHICK Small nuclear ribonucleoprotein associated protein B' (snRNP-B')
           (Sm protein B') (Sm-B') (SmB') (snRPB')
          Length = 240

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = +1

Query: 13  PGEAPPPPGFRQEYGPPPP 69
           PG  PPPPG R   GPPPP
Sbjct: 218 PGMRPPPPGMR---GPPPP 233
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,662,925
Number of Sequences: 369166
Number of extensions: 1048502
Number of successful extensions: 5280
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5041
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2871696580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)