Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_I09
(482 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9LKA5|UMP1_ARATH Unknown mitochondrial protein At3g15000 37 0.024
sp|Q99935|PROL1_HUMAN Proline-rich protein 1 precursor (PRL... 33 0.34
sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 (Deleted in ... 32 1.00
sp|P59983|YP90_MYCBO Hypothetical protein Mb2590 32 1.00
sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 (Deleted in ... 32 1.00
sp|Q50738|YP60_MYCTU Hypothetical protein Rv2560/MT2637 32 1.00
sp|P05143|PMP3_MOUSE Proline-rich protein MP-3 32 1.00
sp|P14678|RSMB_HUMAN Small nuclear ribonucleoprotein associ... 31 1.3
sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein associ... 31 1.3
sp|Q9PV94|RSMB_CHICK Small nuclear ribonucleoprotein associ... 31 1.3
>sp|Q9LKA5|UMP1_ARATH Unknown mitochondrial protein At3g15000
Length = 395
Score = 37.0 bits (84), Expect = 0.024
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 16 GEAPPPPGFRQEYGPPPPYE-SAHRYKGPHSAGATNS 123
G APPPP Q YGPPPP R+ P+ A N+
Sbjct: 269 GSAPPPPHMGQNYGPPPPNNMGGPRHPPPYGAPPQNN 305
>sp|Q99935|PROL1_HUMAN Proline-rich protein 1 precursor (PRL1) (Basic proline-rich
lacrimal protein)
Length = 201
Score = 33.1 bits (74), Expect = 0.34
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Frame = +1
Query: 13 PGEAPPPPGFRQEY---GPPPPYES 78
PG+ PPPP +R + PPPPY+S
Sbjct: 31 PGQLPPPPLYRPRWVPPSPPPPYDS 55
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 (Deleted in azoospermia-associated protein
1)
Length = 407
Score = 31.6 bits (70), Expect = 1.00
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 13 PGEAPPPPGFRQEYGPPPPY 72
PG PPP GF Q YG PP +
Sbjct: 271 PGGFPPPQGFPQGYGAPPQF 290
>sp|P59983|YP90_MYCBO Hypothetical protein Mb2590
Length = 325
Score = 31.6 bits (70), Expect = 1.00
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +1
Query: 25 PPPPGFRQEYGPPPPYESAHRYKGPHSAG 111
PPPPG+ GPPPP H S G
Sbjct: 54 PPPPGYGPPPGPPPPGYPTHLQSSGFSVG 82
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 (Deleted in azoospermia-associated protein
1)
Length = 406
Score = 31.6 bits (70), Expect = 1.00
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 13 PGEAPPPPGFRQEYGPPPPY 72
PG PPP GF Q YG PP +
Sbjct: 271 PGGFPPPQGFPQGYGAPPQF 290
>sp|Q50738|YP60_MYCTU Hypothetical protein Rv2560/MT2637
Length = 325
Score = 31.6 bits (70), Expect = 1.00
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +1
Query: 25 PPPPGFRQEYGPPPPYESAHRYKGPHSAG 111
PPPPG+ GPPPP H S G
Sbjct: 54 PPPPGYGPPPGPPPPGYPTHLQSSGFSVG 82
>sp|P05143|PMP3_MOUSE Proline-rich protein MP-3
Length = 296
Score = 31.6 bits (70), Expect = 1.00
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +1
Query: 13 PGEAPPPPGF---RQEYGPPPPYESAHR-YKGPHSAG 111
P + PPPPG R GPPPP R +GPH G
Sbjct: 236 PPQGPPPPGGPQPRPPQGPPPPTGPQPRPTQGPHPTG 272
Score = 28.5 bits (62), Expect = 8.5
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = +1
Query: 13 PGEAPPPPGFRQE---YGPPPP 69
P + PPPPG Q+ GPPPP
Sbjct: 97 PPQGPPPPGGPQQRPPQGPPPP 118
Score = 28.5 bits (62), Expect = 8.5
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = +1
Query: 13 PGEAPPPPGFRQE---YGPPPP 69
P + PPPPG Q+ GPPPP
Sbjct: 111 PPQGPPPPGGPQQRPPQGPPPP 132
>sp|P14678|RSMB_HUMAN Small nuclear ribonucleoprotein associated proteins B and B'
(snRNP-B) (Sm protein B/B') (Sm-B/Sm-B') (SmB/SmB')
Length = 240
Score = 31.2 bits (69), Expect = 1.3
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = +1
Query: 13 PGEAPPPPGFRQEYGPPPP 69
PG PPPPG R GPPPP
Sbjct: 218 PGMRPPPPGMR---GPPPP 233
>sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm
protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing
protein)
sp|P63164|RSMN_RAT Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm
protein N) (Sm-N) (SmN) (Sm-D)
sp|P63163|RSMN_MOUSE Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm
protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing
protein)
Length = 240
Score = 31.2 bits (69), Expect = 1.3
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = +1
Query: 13 PGEAPPPPGFRQEYGPPPP 69
PG PPPPG R GPPPP
Sbjct: 218 PGMRPPPPGIR---GPPPP 233
>sp|Q9PV94|RSMB_CHICK Small nuclear ribonucleoprotein associated protein B' (snRNP-B')
(Sm protein B') (Sm-B') (SmB') (snRPB')
Length = 240
Score = 31.2 bits (69), Expect = 1.3
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = +1
Query: 13 PGEAPPPPGFRQEYGPPPP 69
PG PPPPG R GPPPP
Sbjct: 218 PGMRPPPPGMR---GPPPP 233
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,662,925
Number of Sequences: 369166
Number of extensions: 1048502
Number of successful extensions: 5280
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5041
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2871696580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)