Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_A09
(467 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9LKA5|UMP1_ARATH Unknown mitochondrial protein At3g15000 37 0.022
sp|P59983|YP90_MYCBO Hypothetical protein Mb2590 32 0.93
sp|Q50738|YP60_MYCTU Hypothetical protein Rv2560/MT2637 32 0.93
sp|P32793|YHH6_YEAST Hypothetical 41.8 kDa protein in SPO13... 30 2.1
sp|Q99935|PROL1_HUMAN Proline-rich protein 1 precursor (PRL... 30 2.1
sp|P10162|PRB4L_HUMAN Basic salivary proline-rich protein 4... 30 2.7
sp|O95076|ALX3_HUMAN Homeobox protein aristaless-like 3 (Pr... 30 3.5
sp|P05143|PMP3_MOUSE Proline-rich protein MP-3 30 3.5
sp|P52167|GATB_BOMMO Transcription factor BCFI (GATA-beta) ... 30 3.5
sp|O15265|ATX7_HUMAN Ataxin-7 (Spinocerebellar ataxia type ... 29 4.6
>sp|Q9LKA5|UMP1_ARATH Unknown mitochondrial protein At3g15000
Length = 395
Score = 37.0 bits (84), Expect = 0.022
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 1 GEAPPPPGFRQEYGPPPPYE-SAHRYKGPHSAGATNS 108
G APPPP Q YGPPPP R+ P+ A N+
Sbjct: 269 GSAPPPPHMGQNYGPPPPNNMGGPRHPPPYGAPPQNN 305
>sp|P59983|YP90_MYCBO Hypothetical protein Mb2590
Length = 325
Score = 31.6 bits (70), Expect = 0.93
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +1
Query: 10 PPPPGFRQEYGPPPPYESAHRYKGPHSAG 96
PPPPG+ GPPPP H S G
Sbjct: 54 PPPPGYGPPPGPPPPGYPTHLQSSGFSVG 82
>sp|Q50738|YP60_MYCTU Hypothetical protein Rv2560/MT2637
Length = 325
Score = 31.6 bits (70), Expect = 0.93
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +1
Query: 10 PPPPGFRQEYGPPPPYESAHRYKGPHSAG 96
PPPPG+ GPPPP H S G
Sbjct: 54 PPPPGYGPPPGPPPPGYPTHLQSSGFSVG 82
>sp|P32793|YHH6_YEAST Hypothetical 41.8 kDa protein in SPO13-ARG4 intergenic region
Length = 382
Score = 30.4 bits (67), Expect = 2.1
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +1
Query: 175 TNQRSPYYQQTTDYSVPPSSRHDYHSASTTRRGYDSDESREYRTASGYGGT 327
T Y + T+YS P S DY + RRGY RE + G+G T
Sbjct: 248 TRWEDDLYDRDTEYSRPNHSGRDYDNTRGNRRGY----GRERGYSLGHGPT 294
>sp|Q99935|PROL1_HUMAN Proline-rich protein 1 precursor (PRL1) (Basic proline-rich
lacrimal protein)
Length = 201
Score = 30.4 bits (67), Expect = 2.1
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Frame = +1
Query: 1 GEAPPPPGFRQEY---GPPPPYES 63
G+ PPPP +R + PPPPY+S
Sbjct: 32 GQLPPPPLYRPRWVPPSPPPPYDS 55
>sp|P10162|PRB4L_HUMAN Basic salivary proline-rich protein 4 allele L (Salivary
proline-rich protein Po) (Parotid o protein) [Contains:
Peptide P-D]
Length = 276
Score = 30.0 bits (66), Expect = 2.7
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 8/35 (22%)
Frame = +1
Query: 4 EAPPPPGFRQEYGPPP--------PYESAHRYKGP 84
E PPP G Q GPPP P + H+ +GP
Sbjct: 66 ERPPPQGGNQSQGPPPHPGKPESRPPQGGHQSQGP 100
Score = 28.9 bits (63), Expect = 6.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 4 EAPPPPGFRQEYGPPPP 54
+ PPP G Q GPPPP
Sbjct: 24 QGPPPQGGNQSQGPPPP 40
>sp|O95076|ALX3_HUMAN Homeobox protein aristaless-like 3 (Proline-rich transcription
factor ALX3)
Length = 343
Score = 29.6 bits (65), Expect = 3.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 7 APPPPGFRQEYGPPPPYESAHRYKGPHSA 93
A PP + Q+ GP P H Y+GP A
Sbjct: 65 AKPPAKYLQDLGPGPALNGGHFYEGPAEA 93
>sp|P05143|PMP3_MOUSE Proline-rich protein MP-3
Length = 296
Score = 29.6 bits (65), Expect = 3.5
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = +1
Query: 4 EAPPPPGF---RQEYGPPPPYESAHR-YKGPHSAG 96
+ PPPPG R GPPPP R +GPH G
Sbjct: 238 QGPPPPGGPQPRPPQGPPPPTGPQPRPTQGPHPTG 272
>sp|P52167|GATB_BOMMO Transcription factor BCFI (GATA-beta) (BmGATA-beta)
Length = 508
Score = 29.6 bits (65), Expect = 3.5
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +1
Query: 10 PPPPGFRQEYGPPPPYESAHRYKGPHSAGATNS 108
PP P +Y PPPPY H + G +
Sbjct: 89 PPAPLHYDDYAPPPPYSHDHHHHLEQGGGGNGA 121
>sp|O15265|ATX7_HUMAN Ataxin-7 (Spinocerebellar ataxia type 7 protein)
Length = 892
Score = 29.3 bits (64), Expect = 4.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 4 EAPPPPGFRQEYGPPPPYESAHRYKGPHSAGAT 102
+ PPP RQ++ PPPP + GP +A +
Sbjct: 39 QPPPPQPQRQQHPPPPPRRTRPEDGGPGAASTS 71
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,384,184
Number of Sequences: 369166
Number of extensions: 1046286
Number of successful extensions: 4965
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4823
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)