Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_B06
(467 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48324|YCX2_CYAPA Hypothetical 24.3 kDa protein in PSBH-... 32 0.55
sp|Q8WYB5|MYST4_HUMAN Histone acetyltransferase MYST4 (MYST... 31 1.2
sp|Q8WML3|MYST4_MACFA Histone acetyltransferase MYST4 (MYST... 31 1.2
sp|Q9RDV6|RPOA_MYCGA DNA-directed RNA polymerase alpha chai... 31 1.6
sp|P97302|BACH1_MOUSE Transcription regulator protein BACH1... 30 2.1
sp|Q9BQ16|TICN3_HUMAN Testican-3 precursor (SPARC/osteonect... 30 3.5
sp|Q5RD69|TICN3_PONPY Testican-3 precursor (SPARC/osteonect... 30 3.5
sp|Q8BRB7|MYST4_MOUSE Histone acetyltransferase MYST4 (MYST... 29 4.6
sp|P87292|MTF1_SACKL Mitochondrial replication protein MTF1... 29 6.1
sp|O88799|ZAN_MOUSE Zonadhesin precursor 28 7.9
>sp|P48324|YCX2_CYAPA Hypothetical 24.3 kDa protein in PSBH-RPL11 intergenic region
(ORF182)
Length = 182
Score = 32.3 bits (72), Expect = 0.55
Identities = 29/124 (23%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Frame = +3
Query: 93 VEDRVQYHS*SVLEVLQIV*INIFLKLFNVKIWVQMVMTFNGNVMLNSKQI*NLGKLMSI 272
++D+++ +LE ++I + I L + +W+ F V+++ KQI NL +L +
Sbjct: 6 LKDQIKQLYLVLLEEIKIFILTIKLVISKKNVWIISYYHFLKKVVVSKKQILNLSRL--L 63
Query: 273 VKDMIIQMINMF*KDLVD*GIHWIYVVLVVN-TMKVKQPKRNLLME---YIFLIFCVIVC 440
++ ++ + +F DL+ I + + N K+ NLL + +I++IF + +
Sbjct: 64 LRFTLLSIFILFVLDLISKYITAPILTGIFNFIFKILISLVNLLYKAIYWIYIIFAIFLH 123
Query: 441 FVLY 452
F+ Y
Sbjct: 124 FMNY 127
>sp|Q8WYB5|MYST4_HUMAN Histone acetyltransferase MYST4 (MYST protein 4) (MOZ, YBF2/SAS3,
SAS2 and TIP60 protein 4) (Histone acetyltransferase
MOZ2) (Monocytic leukemia zinc finger protein-related
factor) (Histone acetyltransferase MORF)
Length = 2073
Score = 31.2 bits (69), Expect = 1.2
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 80 HRTNGRRSSPVPQLE-CIGGSANCLDKYIPQVVQCKNMGSDGYDVQWKCYAELKTNLK 250
H + R+ P+P C+G + +K +++ C + GS G+ K EL TN+K
Sbjct: 203 HEKDQPRADPIPICSFCLGTKESNREKKPEELLSCADCGSSGHPSCLKFCPELTTNVK 260
>sp|Q8WML3|MYST4_MACFA Histone acetyltransferase MYST4 (MYST protein 4) (MOZ, YBF2/SAS3,
SAS2 and TIP60 protein 4)
Length = 1784
Score = 31.2 bits (69), Expect = 1.2
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 80 HRTNGRRSSPVPQLE-CIGGSANCLDKYIPQVVQCKNMGSDGYDVQWKCYAELKTNLK 250
H + R+ P+P C+G + +K +++ C + GS G+ K EL TN+K
Sbjct: 203 HEKDQPRADPIPICSFCLGTKESNREKKPEELLSCADCGSSGHPSCLKFCPELTTNVK 260
>sp|Q9RDV6|RPOA_MYCGA DNA-directed RNA polymerase alpha chain (RNAP alpha subunit)
(Transcriptase alpha chain) (RNA polymerase alpha
subunit)
Length = 325
Score = 30.8 bits (68), Expect = 1.6
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Frame = +2
Query: 2 SIFILSVLATDKIK--------LTDIQVLTLNQGHRTNGRRSSPVPQLECIGGSANCLDK 157
+I I S + +D +K L DIQVL N + S P+ QL+ S NCL +
Sbjct: 220 AIAIASKILSDHLKPLIDINKSLHDIQVLNEKNVEEKNKKLSIPIEQLDLTVRSYNCLKR 279
Query: 158 YIPQVVQ 178
+ Q V+
Sbjct: 280 HGIQTVE 286
>sp|P97302|BACH1_MOUSE Transcription regulator protein BACH1 (BTB and CNC homolog 1)
Length = 739
Score = 30.4 bits (67), Expect = 2.1
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Frame = +2
Query: 29 TDKIKLTDIQVLTLNQGHR---TNGRRSSPVPQLECIGGSANCLDKYIPQVVQCKNM--- 190
TDKI+ TL G R T + + +LEC GG+ C D ++ +++C+ M
Sbjct: 236 TDKIR-------TLESGVRDVHTASVQPNETSELECFGGAQGCADLHV--ILKCEGMKAA 286
Query: 191 ----GSDGYDVQWKCYAE 232
++G D +C AE
Sbjct: 287 MESEDTEGQDPSPQCPAE 304
>sp|Q9BQ16|TICN3_HUMAN Testican-3 precursor (SPARC/osteonectin, CWCV, and Kazal-like
domains proteoglycan 3)
Length = 436
Score = 29.6 bits (65), Expect = 3.5
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 155 KYIPQVVQCKNMGSDGYDVQWKCYAELKTNLKFGKIDVNCEGY-DYPNDK 301
K P V GSDG+ ++C E + + +I V CEG+ P+DK
Sbjct: 140 KQCPVVYPSPVCGSDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDK 189
>sp|Q5RD69|TICN3_PONPY Testican-3 precursor (SPARC/osteonectin, CWCV, and Kazal-like
domains proteoglycan 3)
Length = 436
Score = 29.6 bits (65), Expect = 3.5
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 155 KYIPQVVQCKNMGSDGYDVQWKCYAELKTNLKFGKIDVNCEGY-DYPNDK 301
K P V GSDG+ ++C E + + +I V CEG+ P+DK
Sbjct: 140 KQCPVVYPSPVCGSDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDK 189
>sp|Q8BRB7|MYST4_MOUSE Histone acetyltransferase MYST4 (MYST protein 4) (MOZ, YBF2/SAS3,
SAS2 and TIP60 protein 4) (Querkopf protein)
Length = 1872
Score = 29.3 bits (64), Expect = 4.6
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 80 HRTNGRRSSPVPQLE-CIGGSANCLDKYIPQVVQCKNMGSDGYDVQWKCYAELKTNLK 250
H + R+ P+P C+G + +K +++ C + GS G+ K EL N+K
Sbjct: 204 HEKDQPRADPIPICSFCLGTKESNREKKPEELLSCADCGSSGHPSCLKFCPELTANVK 261
>sp|P87292|MTF1_SACKL Mitochondrial replication protein MTF1 (Mitochondrial transcription
factor mtTFB)
Length = 338
Score = 28.9 bits (63), Expect = 6.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 263 DVNCEGYDYPNDKYVLKGSCGLRYTLDIRSSGGKYYESETTEKK 394
D++ + +DY ++ S L +D GGK Y SE E K
Sbjct: 252 DIDLDNWDYVTKHLLILKSTPLHTAIDSLGHGGKQYFSEKVEDK 295
>sp|O88799|ZAN_MOUSE Zonadhesin precursor
Length = 5376
Score = 28.5 bits (62), Expect = 7.9
Identities = 30/113 (26%), Positives = 39/113 (34%), Gaps = 29/113 (25%)
Frame = +2
Query: 125 CIGGSANCLDKYIPQVVQCKNMGSDGYDVQWKCYAELKTNLKFGKI-----------DVN 271
C+ GS C D P CKN +DG K + + KF D +
Sbjct: 2425 CMKGSMRCWDFQCPPGTYCKN-SNDGSSNCVKISLQCPAHSKFTDCLPPCHPSCSDPDGH 2483
Query: 272 CEG------------------YDYPNDKYVLKGSCGLRYTLDIRSSGGKYYES 376
CEG Y NDK VL+ CG ++T GK + S
Sbjct: 2484 CEGISTNAHSNCKEGCVCQPGYVLRNDKCVLRIECGCQHTQGGFIPAGKNWTS 2536
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,579,598
Number of Sequences: 369166
Number of extensions: 1066258
Number of successful extensions: 2515
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2512
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)