Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_I03
(725 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9LKA5|UMP1_ARATH Unknown mitochondrial protein At3g15000 38 0.024
sp|P81489|PRPP_HUMAN Salivary proline-rich protein II-1 36 0.092
sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 (Deleted in ... 35 0.27
sp|Q09442|YP85_CAEEL Hypothetical RNA-binding protein C08B1... 35 0.27
sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 (Deleted in ... 35 0.27
sp|P05143|PMP3_MOUSE Proline-rich protein MP-3 34 0.35
sp|P48038|ACRO_RABIT Acrosin precursor [Contains: Acrosin l... 34 0.35
sp|P22357|ASF1_HELAN Anther-specific protein SF18 precursor 34 0.46
sp|O88874|CCNK_MOUSE Cyclin-K 34 0.46
sp|P38486|LEG3_CANFA Galectin-3 (Galactose-specific lectin ... 34 0.46
>sp|Q9LKA5|UMP1_ARATH Unknown mitochondrial protein At3g15000
Length = 395
Score = 38.1 bits (87), Expect = 0.024
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 481 PNTNGSPDASAPNVGYPGEAPPPPGFRQEYGPPPPYE-SAHRYKGPHSAGATNS 639
P+ GS P++G G APPPP Q YGPPPP R+ P+ A N+
Sbjct: 255 PHIGGSAPPP-PHMG--GSAPPPPHMGQNYGPPPPNNMGGPRHPPPYGAPPQNN 305
>sp|P81489|PRPP_HUMAN Salivary proline-rich protein II-1
Length = 174
Score = 36.2 bits (82), Expect = 0.092
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +1
Query: 478 SPNTNGSPDASAPNVGYPG--EAPPPPGFRQEYGPPPP 585
+P G P+ P G PG E PPP G Q + PPPP
Sbjct: 97 TPPPPGKPEGRPPQQGGPGKPERPPPQGGDQSHRPPPP 134
Score = 32.3 bits (72), Expect = 1.3
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +1
Query: 481 PNTNGSPDASAPNVGYPGEAPPPPGFRQEYGPPPP 585
P P P G P + PPP G Q GPPPP
Sbjct: 24 PQGGNQPQRPPPPPGKP-QGPPPQGGDQSQGPPPP 57
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 (Deleted in azoospermia-associated protein
1)
Length = 407
Score = 34.7 bits (78), Expect = 0.27
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Frame = +1
Query: 481 PNTNGSPDASAPNVGY-----PGEAPPPPGFRQEYGPPPPY 588
P G+P P Y PG PPP GF Q YG PP +
Sbjct: 250 PAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQF 290
>sp|Q09442|YP85_CAEEL Hypothetical RNA-binding protein C08B11.5 in chromosome II
Length = 388
Score = 34.7 bits (78), Expect = 0.27
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Frame = +1
Query: 481 PNTNGSPDASAPNVGYPGEAPPPPGFRQE------YGPPPP 585
P G P P + YPG PPPP R Y PPPP
Sbjct: 328 PGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPP 368
Score = 31.2 bits (69), Expect = 3.0
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Frame = +1
Query: 481 PNTNGSPDASAPN-VGYPGEA----PPPPGFRQEYGPPPPYESAHRYKGP 615
P G P P+ G PG PPPPG R G PPP + GP
Sbjct: 311 PGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGP 360
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 (Deleted in azoospermia-associated protein
1)
Length = 406
Score = 34.7 bits (78), Expect = 0.27
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Frame = +1
Query: 481 PNTNGSPDASAPNVGY-----PGEAPPPPGFRQEYGPPPPY 588
P G+P P Y PG PPP GF Q YG PP +
Sbjct: 250 PAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQF 290
>sp|P05143|PMP3_MOUSE Proline-rich protein MP-3
Length = 296
Score = 34.3 bits (77), Expect = 0.35
Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +1
Query: 487 TNGSPDASAPNVGYPGEAPPPPGF---RQEYGPPPPYESAHR-YKGPHSAG 627
T G P P P + PPPPG R GPPPP R +GPH G
Sbjct: 223 TQGPPPTGGPQQR-PPQGPPPPGGPQPRPPQGPPPPTGPQPRPTQGPHPTG 272
Score = 33.9 bits (76), Expect = 0.46
Identities = 19/46 (41%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Frame = +1
Query: 487 TNGSPDASAPNVGYPGEAPPP--PGFRQEYGPPPPYESAHRYKGPH 618
T G P P YP PPP P R GPPPP GPH
Sbjct: 168 TQGPPPTGGPQQRYPQSPPPPGGPQPRPPQGPPPP-------GGPH 206
Score = 31.6 bits (70), Expect = 2.3
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Frame = +1
Query: 481 PNTNGSPDASAPNVG---YPGEAPPPPGF---RQEYGPPPP 585
P NGS P G P + PPPPG R GPPPP
Sbjct: 22 PPVNGSQQGPPPPGGPQPRPPQGPPPPGGPQPRPPQGPPPP 62
>sp|P48038|ACRO_RABIT Acrosin precursor [Contains: Acrosin light chain; Acrosin heavy
chain]
Length = 431
Score = 34.3 bits (77), Expect = 0.35
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +1
Query: 475 ISPNTNGSPDASAPNVGYPGEAPPPPGFRQEYGPPPPYESAHRYKGP 615
I P T P +P V P A PP F+ GPP P+ H + P
Sbjct: 295 IQPATPTPPTTRSPGVHQPPSAHPPWYFQHASGPPHPHPHPHPHPHP 341
>sp|P22357|ASF1_HELAN Anther-specific protein SF18 precursor
Length = 161
Score = 33.9 bits (76), Expect = 0.46
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = +1
Query: 448 VCFVLYYFCISPNTNGSPDASAPNVGYPGEAPPPPGFRQEYGPPPP 585
+CF YF P N P AP G PG P PPG + P PP
Sbjct: 58 MCFC--YFDCDPQKNPGPPPGAP--GTPGTPPAPPGKGEGDAPHPP 99
>sp|O88874|CCNK_MOUSE Cyclin-K
Length = 554
Score = 33.9 bits (76), Expect = 0.46
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 466 YFCISPNTNGSPDASAPNVGYPGEAPPPPGFRQEYGPPPP 585
Y + P + P P GYP PPPP + + PPPP
Sbjct: 460 YGALPPASFPPPTIPPPTPGYP---PPPPTYNPNFPPPPP 496
>sp|P38486|LEG3_CANFA Galectin-3 (Galactose-specific lectin 3) (Mac-2 antigen)
(IgE-binding protein) (35 kDa lectin) (Carbohydrate
binding protein 35) (CBP 35) (Laminin-binding protein)
(Lectin L-29)
Length = 296
Score = 33.9 bits (76), Expect = 0.46
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Frame = +1
Query: 493 GSPDASAPNVGYPGEAPP-------PPGFRQEYGPPPPY--ESAHRYKGPHSAG 627
G AP GYPG+APP PPG PP Y +A Y GP + G
Sbjct: 70 GGYPGQAPPGGYPGQAPPGGYPGQAPPGGYPGQAPPGTYPGPTAPAYPGPTAPG 123
Score = 29.6 bits (65), Expect = 8.6
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Frame = +1
Query: 493 GSPDASAPNVGYPGEAPP-------PPGFRQEYGPPPPY 588
G+ AP GYPG+APP PPG PP Y
Sbjct: 43 GAYPGQAPPGGYPGQAPPGGYPGQAPPGGYPGQAPPGGY 81
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,779,446
Number of Sequences: 369166
Number of extensions: 1955874
Number of successful extensions: 8849
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8152
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6510836890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)