Planarian EST Database

DrC_00976

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00976 GAGATAGCCATTTTAAGATGCCACGTCTATATATTGGAAATTTGCCCAGACGAATTGAGG AAAGGGACATAAAAAAGTTTTTTCGAGAATATGGTCGTATTCGTAGCGTTGACTTAAAAA ACGGTTATGGATTTGTGGAAATTGATGATCGCAGGGATGCAGAAGATGCTATTCACGATT TAGATGGTACAAAGTTGCTTGGTGAGAGAGTTACTGTTGAAATGGCTCGTTCCAATGCTA GATTTGGAGGTGGAGGAGATAGAGGTGGTGGAGGTGACAGAGGTGGACGAGGATTCGATA ATAGAAACAATCGGTATGACAGCAGAGACTCTCGGGATAGATACAATTCTAGAAAGCCGA TAAGATCAGAACATCGAATTATTGTGGATGGTTTGTCATCCAGGGTTAGCTGGCAACATC AATGCTGTGGTCGCATCTCAATCACTATTTAATGGGTGGCAAACATGACGGTTAAATGTG GTTTTAATGCTTAATTATATGGAGGGCCTATTGAGGTGATCATTAGAGTACATTTGGATC GTGGATGAAAATGATCCAATTTCACTTAACTGACGCTTTCTAATGGTCTGTGGATGACTT ATTTTGGAAATAATGACGTGATATGAGGACTGCGCGGCAAATTTTATCTTGTTTTTATTT AGGACTTGAAAGATCTAATGCGAAAGGTTGGTGAAGTAACTTTCGCAGATGCACACAAAT TGAGACAAAACCAGGGCGTTGTCGAGTTTTCAAACAGTTCCGACATGAAGGCTGCAATTG ATAAATATGATGGTTACGAATTATACGGGTATAATCTGAAAGTTCATGAAGATCGCGGAG GCGGAATGAAACGCAAATCTCGAAGCCGCTCGTATCATCGCCGAAGAAGTAGCAGCAGAT CAAAACGATCCGCAAGTAAATCCAGGAGTCGGTCTAGAAGCAAATCAAGTCGAAAACGTT CAAGAAGTCGCAAAAGATCGTCTAGTCGTAAGCGCTCCGACAGTCGCAAACGATCACGTA GCTACAGGTCTAAGTCAAGGAGTGCTAAGTCTTATTCTAAATCAAAGAGTCCTGTGCAGA AGTGGGCAGTTGAGGATGAAAATGATTCAAAGTCCAAATCGAAATCTAAATCGGTTTCAA GAAGTAGATCTCGATCAATGGAAAAGAAGAATTCTCCTAAATCTAGGTCTAAATCCTTGT CCAAGGAAAGGGAAGAACGTAGTGTTTCGCGAAGCAGAAGTCGTAGTAGAAGTATGAGTA AGAGTAGAAGCAGGTCAAATTCTCCTGGTGACCAAGAGTCTGTTAAATCGGCATGTAGTG ATGCTGAAGATCGACCAAATCCTGAAGAAGATGCATCTAATGAAAATGTAAATGATGAAA ACATGGATTCTAATTAATGTCATTCTTAATTGTATTTAATAGTTTTAATAAATAATGAAC

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00976
         (1440 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26686|SRR55_DROME  Serine-arginine protein 55 (SRP55) (E...   105   3e-22
sp|Q13247|SFRS6_HUMAN  Splicing factor, arginine/serine-rich...   104   7e-22
sp|Q08170|SFRS4_HUMAN  Splicing factor, arginine/serine-rich...   103   1e-21
sp|Q8VE97|SFRS4_MOUSE  Splicing factor, arginine/serine-rich 4    103   1e-21
sp|Q09167|SFRS5_RAT  Splicing factor, arginine/serine-rich 5...   100   1e-20
sp|Q13243|SFRS5_HUMAN  Splicing factor, arginine/serine-rich...   100   1e-20
sp|Q23121|RSP1_CAEEL  Probable splicing factor, arginine/ser...    99   3e-20
sp|Q23120|RSP2_CAEEL  Probable splicing factor, arginine/ser...    94   1e-18
sp|O35326|SFRS5_MOUSE  Splicing factor, arginine/serine-rich...    93   2e-18
sp|Q10021|RSP5_CAEEL  Probable splicing factor, arginine/ser...    83   2e-15

>sp|P26686|SRR55_DROME Serine-arginine protein 55 (SRP55) (Enhancer of deformed) (52-kDa
           bracketing protein) (B52 protein)
          Length = 376

 Score =  105 bits (262), Expect = 3e-22
 Identities = 55/131 (41%), Positives = 76/131 (58%)
 Frame = +3

Query: 24  RLYIGNLPRRIEERDIKKFFREYGRIRSVDLKNGYGFVEIDDRRDAEDAIHDLDGTKLLG 203
           R+Y+G LP  + ERD+++FF+ YGR R + +KNGYGFVE +D RDA+DA+++L+G +LLG
Sbjct: 5   RVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLG 64

Query: 204 ERVTVEMARSNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPIRSEHRII 383
           ERV VE AR  A                                       P+R+E+R+I
Sbjct: 65  ERVVVEPARGTA-RGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEYRLI 123

Query: 384 VDGLSSRVSWQ 416
           V+ LSSRVSWQ
Sbjct: 124 VENLSSRVSWQ 134


 Score = 72.4 bits (176), Expect = 3e-12
 Identities = 35/57 (61%), Positives = 44/57 (77%)
 Frame = +3

Query: 663 DLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHED 833
           DLKD MR+ GEVT+ADAHK R+N+GVVEF++ SDMK AI+K D  EL G  + + ED
Sbjct: 135 DLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLVED 191

>sp|Q13247|SFRS6_HUMAN Splicing factor, arginine/serine-rich 6 (Pre-mRNA splicing factor
           SRP55)
          Length = 344

 Score =  104 bits (259), Expect = 7e-22
 Identities = 56/133 (42%), Positives = 74/133 (55%)
 Frame = +3

Query: 18  MPRLYIGNLPRRIEERDIKKFFREYGRIRSVDLKNGYGFVEIDDRRDAEDAIHDLDGTKL 197
           MPR+YIG L   + E+DI++FF  YGR+  VDLKNGYGFVE +D RDA+DA+++L+G +L
Sbjct: 1   MPRVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKEL 60

Query: 198 LGERVTVEMARSNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPIRSEHR 377
            GERV VE AR                                          P+R+E+R
Sbjct: 61  CGERVIVEHARG---------PRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYR 111

Query: 378 IIVDGLSSRVSWQ 416
           +IV+ LSSR SWQ
Sbjct: 112 LIVENLSSRCSWQ 124


 Score = 76.3 bits (186), Expect = 2e-13
 Identities = 35/57 (61%), Positives = 45/57 (78%)
 Frame = +3

Query: 663 DLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHED 833
           DLKD MR+ GEVT+ADAHK R N+GV+EF + SDMK A+DK DG E+ G N+++ ED
Sbjct: 125 DLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIED 181

>sp|Q08170|SFRS4_HUMAN Splicing factor, arginine/serine-rich 4 (Pre-mRNA splicing factor
           SRP75) (SRP001LB)
          Length = 494

 Score =  103 bits (257), Expect = 1e-21
 Identities = 57/133 (42%), Positives = 73/133 (54%)
 Frame = +3

Query: 18  MPRLYIGNLPRRIEERDIKKFFREYGRIRSVDLKNGYGFVEIDDRRDAEDAIHDLDGTKL 197
           MPR+YIG L  +  ERD+++FF+ YG+I  VDLKNGYGFVE DD RDA+DA+++L+G  L
Sbjct: 1   MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDL 60

Query: 198 LGERVTVEMARSNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPIRSEHR 377
            GERV VE AR                                          P R+E+R
Sbjct: 61  CGERVIVEHARG---------------PRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYR 105

Query: 378 IIVDGLSSRVSWQ 416
           +IV+ LSSR SWQ
Sbjct: 106 LIVENLSSRCSWQ 118


 Score = 71.6 bits (174), Expect = 5e-12
 Identities = 33/57 (57%), Positives = 45/57 (78%)
 Frame = +3

Query: 663 DLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHED 833
           DLKD MR+ GEVT+ADAHK R+N+GV+EF + SDMK A++K DG E+ G  +++ ED
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED 175

>sp|Q8VE97|SFRS4_MOUSE Splicing factor, arginine/serine-rich 4
          Length = 489

 Score =  103 bits (257), Expect = 1e-21
 Identities = 57/133 (42%), Positives = 73/133 (54%)
 Frame = +3

Query: 18  MPRLYIGNLPRRIEERDIKKFFREYGRIRSVDLKNGYGFVEIDDRRDAEDAIHDLDGTKL 197
           MPR+YIG L  +  ERD+++FF+ YG+I  VDLKNGYGFVE DD RDA+DA+++L+G  L
Sbjct: 1   MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDL 60

Query: 198 LGERVTVEMARSNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPIRSEHR 377
            GERV VE AR                                          P R+E+R
Sbjct: 61  CGERVIVEHARG---------------PRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYR 105

Query: 378 IIVDGLSSRVSWQ 416
           +IV+ LSSR SWQ
Sbjct: 106 LIVENLSSRCSWQ 118


 Score = 71.6 bits (174), Expect = 5e-12
 Identities = 33/57 (57%), Positives = 45/57 (78%)
 Frame = +3

Query: 663 DLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHED 833
           DLKD MR+ GEVT+ADAHK R+N+GV+EF + SDMK A++K DG E+ G  +++ ED
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED 175

>sp|Q09167|SFRS5_RAT Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
           SRP40) (Insulin-induced growth response protein CL-4)
           (Delayed-early protein HRS)
          Length = 269

 Score =  100 bits (248), Expect = 1e-20
 Identities = 52/131 (39%), Positives = 75/131 (57%)
 Frame = +3

Query: 24  RLYIGNLPRRIEERDIKKFFREYGRIRSVDLKNGYGFVEIDDRRDAEDAIHDLDGTKLLG 203
           R++IG L     E+D+++FF+ YGRIR +DLK G+GFVE +D RDA+DA+++LDG +L  
Sbjct: 5   RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query: 204 ERVTVEMARSNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPIRSEHRII 383
           ERVT+E AR+ +                                       P+R+E+R+I
Sbjct: 65  ERVTIEHARARS-------------RGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLI 111

Query: 384 VDGLSSRVSWQ 416
           V+ LSSRVSWQ
Sbjct: 112 VENLSSRVSWQ 122


 Score = 66.2 bits (160), Expect = 2e-10
 Identities = 31/56 (55%), Positives = 42/56 (75%)
 Frame = +3

Query: 663 DLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHE 830
           DLKD MR+ GEVTFADAH+ + N+GVVEF++  D+K AI+K  G E+ G  +K+ E
Sbjct: 123 DLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE 178

>sp|Q13243|SFRS5_HUMAN Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
           SRP40) (Delayed-early protein HRS)
          Length = 272

 Score =  100 bits (248), Expect = 1e-20
 Identities = 52/131 (39%), Positives = 75/131 (57%)
 Frame = +3

Query: 24  RLYIGNLPRRIEERDIKKFFREYGRIRSVDLKNGYGFVEIDDRRDAEDAIHDLDGTKLLG 203
           R++IG L     E+D+++FF+ YGRIR +DLK G+GFVE +D RDA+DA+++LDG +L  
Sbjct: 5   RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query: 204 ERVTVEMARSNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPIRSEHRII 383
           ERVT+E AR+ +                                       P+R+E+R+I
Sbjct: 65  ERVTIEHARARS-------------RGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLI 111

Query: 384 VDGLSSRVSWQ 416
           V+ LSSRVSWQ
Sbjct: 112 VENLSSRVSWQ 122


 Score = 66.2 bits (160), Expect = 2e-10
 Identities = 31/56 (55%), Positives = 42/56 (75%)
 Frame = +3

Query: 663 DLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHE 830
           DLKD MR+ GEVTFADAH+ + N+GVVEF++  D+K AI+K  G E+ G  +K+ E
Sbjct: 123 DLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE 178

>sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1 (RNA-binding
           protein srp-5) (CeSRp75)
          Length = 312

 Score = 99.0 bits (245), Expect = 3e-20
 Identities = 54/140 (38%), Positives = 73/140 (52%), Gaps = 9/140 (6%)
 Frame = +3

Query: 24  RLYIGNLPRRIEERDIKKFFREYGRIRSVDLKNGYGFVEIDDRRDAEDAIHDLDGTKLLG 203
           R+YIG L  R+ E+DI+ FFR YG+IR V LKNG+GFVE DD+RDAEDA+HDL+G +L G
Sbjct: 4   RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63

Query: 204 ERVTVEMARSNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPIR------ 365
           ERV ++ ++                                          P R      
Sbjct: 64  ERVILDYSKPRGGGGDRGGFGGGGRGGARVSSYSGGGGGGRDRFDRYDRGPPRRESRYGR 123

Query: 366 ---SEHRIIVDGLSSRVSWQ 416
              + HR++V+ LSSR+SWQ
Sbjct: 124 PYSTRHRVVVENLSSRISWQ 143

>sp|Q23120|RSP2_CAEEL Probable splicing factor, arginine/serine-rich 2 (RNA-binding
           protein srp-4) (CeSRp40)
          Length = 281

 Score = 94.0 bits (232), Expect = 1e-18
 Identities = 48/133 (36%), Positives = 69/133 (51%)
 Frame = +3

Query: 18  MPRLYIGNLPRRIEERDIKKFFREYGRIRSVDLKNGYGFVEIDDRRDAEDAIHDLDGTKL 197
           M R+YIG LP R  +RD++ FFR YG++  V +KNG+GFV+  D+RDA+DA+HDL+G +L
Sbjct: 1   MVRVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKEL 60

Query: 198 LGERVTVEMARSNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPIRSEHR 377
            GERV +E  R                                         +P  +  R
Sbjct: 61  CGERVILEFPRRKV-------GYNEERSGSGFRGREPTFRKGGERQFSNRYSRPCSTRFR 113

Query: 378 IIVDGLSSRVSWQ 416
           +++D LS+R SWQ
Sbjct: 114 LVIDNLSTRYSWQ 126

>sp|O35326|SFRS5_MOUSE Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
           SRP40) (Delayed-early protein HRS)
          Length = 270

 Score = 92.8 bits (229), Expect = 2e-18
 Identities = 49/131 (37%), Positives = 72/131 (54%)
 Frame = +3

Query: 24  RLYIGNLPRRIEERDIKKFFREYGRIRSVDLKNGYGFVEIDDRRDAEDAIHDLDGTKLLG 203
           R++IG L     E+D+++FF+ YGRIR +DLK G+GFVE +D RDA+DA+++LDG +L  
Sbjct: 5   RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query: 204 ERVTVEMARSNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPIRSEHRII 383
           ERVT+E AR+ +                                         ++ +R+I
Sbjct: 65  ERVTIEHARARS-------------RGGRGRGRYSDRLAVADLGNDRRKCSTCKNRNRLI 111

Query: 384 VDGLSSRVSWQ 416
           V+ LSSRVSWQ
Sbjct: 112 VENLSSRVSWQ 122


 Score = 57.8 bits (138), Expect = 8e-08
 Identities = 26/41 (63%), Positives = 34/41 (82%)
 Frame = +3

Query: 663 DLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDK 785
           DLKD MR+ GEVTFADAH+ + N+GVVEF++  D+K AI+K
Sbjct: 123 DLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEK 163

>sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/serine-rich 5 (RNA-binding
           protein srp-3) (CeSC35-2)
          Length = 208

 Score = 83.2 bits (204), Expect = 2e-15
 Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 2/73 (2%)
 Frame = +3

Query: 18  MPRLYIGNLPRRIEERDIKKFFREYGRIRSVDLKNGYGFVEIDDRRDAEDAIHDLDGTKL 197
           MPRLY+G +P    ERD+++F + YG+I ++ +K G+ FV+ +D RDAEDA HDLDG  +
Sbjct: 1   MPRLYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTM 60

Query: 198 LGE--RVTVEMAR 230
            G   R+ VEMAR
Sbjct: 61  EGSSMRLVVEMAR 73

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,994,618
Number of Sequences: 369166
Number of extensions: 2299847
Number of successful extensions: 5793
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5710
length of database: 68,354,980
effective HSP length: 114
effective length of database: 47,295,190
effective search space used: 17262744350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00976

Planaria EST Database

DrC_00976

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail