Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_F14
(870 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13247|SFRS6_HUMAN Splicing factor, arginine/serine-rich... 76 1e-13
sp|P26686|SRR55_DROME Serine-arginine protein 55 (SRP55) (E... 72 2e-12
sp|Q08170|SFRS4_HUMAN Splicing factor, arginine/serine-rich... 72 3e-12
sp|Q8VE97|SFRS4_MOUSE Splicing factor, arginine/serine-rich 4 72 3e-12
sp|Q09167|SFRS5_RAT Splicing factor, arginine/serine-rich 5... 66 1e-10
sp|Q13243|SFRS5_HUMAN Splicing factor, arginine/serine-rich... 66 1e-10
sp|O35326|SFRS5_MOUSE Splicing factor, arginine/serine-rich... 58 4e-08
sp|P78814|SRP2_SCHPO Pre-mRNA splicing factor srp2 56 1e-07
sp|Q9P2K5|MYEF2_HUMAN Myelin expression factor 2 (MyEF-2) (... 43 0.001
sp|Q8C854|MYEF2_MOUSE Myelin expression factor 2 (MyEF-2) (... 43 0.001
>sp|Q13247|SFRS6_HUMAN Splicing factor, arginine/serine-rich 6 (Pre-mRNA splicing factor
SRP55)
Length = 344
Score = 76.3 bits (186), Expect = 1e-13
Identities = 35/57 (61%), Positives = 45/57 (78%)
Frame = +3
Query: 93 DLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHED 263
DLKD MR+ GEVT+ADAHK R N+GV+EF + SDMK A+DK DG E+ G N+++ ED
Sbjct: 125 DLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIED 181
>sp|P26686|SRR55_DROME Serine-arginine protein 55 (SRP55) (Enhancer of deformed) (52-kDa
bracketing protein) (B52 protein)
Length = 376
Score = 72.4 bits (176), Expect = 2e-12
Identities = 35/57 (61%), Positives = 44/57 (77%)
Frame = +3
Query: 93 DLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHED 263
DLKD MR+ GEVT+ADAHK R+N+GVVEF++ SDMK AI+K D EL G + + ED
Sbjct: 135 DLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLVED 191
>sp|Q08170|SFRS4_HUMAN Splicing factor, arginine/serine-rich 4 (Pre-mRNA splicing factor
SRP75) (SRP001LB)
Length = 494
Score = 71.6 bits (174), Expect = 3e-12
Identities = 33/57 (57%), Positives = 45/57 (78%)
Frame = +3
Query: 93 DLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHED 263
DLKD MR+ GEVT+ADAHK R+N+GV+EF + SDMK A++K DG E+ G +++ ED
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED 175
>sp|Q8VE97|SFRS4_MOUSE Splicing factor, arginine/serine-rich 4
Length = 489
Score = 71.6 bits (174), Expect = 3e-12
Identities = 33/57 (57%), Positives = 45/57 (78%)
Frame = +3
Query: 93 DLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHED 263
DLKD MR+ GEVT+ADAHK R+N+GV+EF + SDMK A++K DG E+ G +++ ED
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED 175
>sp|Q09167|SFRS5_RAT Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
SRP40) (Insulin-induced growth response protein CL-4)
(Delayed-early protein HRS)
Length = 269
Score = 66.2 bits (160), Expect = 1e-10
Identities = 31/56 (55%), Positives = 42/56 (75%)
Frame = +3
Query: 93 DLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHE 260
DLKD MR+ GEVTFADAH+ + N+GVVEF++ D+K AI+K G E+ G +K+ E
Sbjct: 123 DLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE 178
>sp|Q13243|SFRS5_HUMAN Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
SRP40) (Delayed-early protein HRS)
Length = 272
Score = 66.2 bits (160), Expect = 1e-10
Identities = 31/56 (55%), Positives = 42/56 (75%)
Frame = +3
Query: 93 DLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHE 260
DLKD MR+ GEVTFADAH+ + N+GVVEF++ D+K AI+K G E+ G +K+ E
Sbjct: 123 DLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE 178
>sp|O35326|SFRS5_MOUSE Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
SRP40) (Delayed-early protein HRS)
Length = 270
Score = 57.8 bits (138), Expect = 4e-08
Identities = 26/41 (63%), Positives = 34/41 (82%)
Frame = +3
Query: 93 DLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDK 215
DLKD MR+ GEVTFADAH+ + N+GVVEF++ D+K AI+K
Sbjct: 123 DLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEK 163
>sp|P78814|SRP2_SCHPO Pre-mRNA splicing factor srp2
Length = 365
Score = 56.2 bits (134), Expect = 1e-07
Identities = 27/57 (47%), Positives = 35/57 (61%)
Frame = +3
Query: 93 DLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHED 263
DLKD+MRK GE TF DAH+ GVVEFS DM+ A+ +G + G + + ED
Sbjct: 113 DLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTLRED 169
>sp|Q9P2K5|MYEF2_HUMAN Myelin expression factor 2 (MyEF-2) (MST156)
Length = 600
Score = 43.1 bits (100), Expect = 0.001
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Frame = +3
Query: 96 LKDLMR-KVGEVT----FADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHE 260
+KDLMR KVGEVT F DA + GVVEF + +K A++ + Y+L G L + E
Sbjct: 116 IKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKE 175
Query: 261 D 263
D
Sbjct: 176 D 176
>sp|Q8C854|MYEF2_MOUSE Myelin expression factor 2 (MyEF-2) (MEF-2)
Length = 591
Score = 43.1 bits (100), Expect = 0.001
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Frame = +3
Query: 96 LKDLMR-KVGEVT----FADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHE 260
+KDLMR KVGEVT F DA + GVVEF + +K A++ + Y+L G L + E
Sbjct: 107 IKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKE 166
Query: 261 D 263
D
Sbjct: 167 D 167
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,781,673
Number of Sequences: 369166
Number of extensions: 1104380
Number of successful extensions: 2847
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2838
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8598109270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)