Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_K10
(754 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13247|SFRS6_HUMAN Splicing factor, arginine/serine-rich... 64 4e-10
sp|P26686|SRR55_DROME Serine-arginine protein 55 (SRP55) (E... 60 5e-09
sp|Q08170|SFRS4_HUMAN Splicing factor, arginine/serine-rich... 60 8e-09
sp|Q8VE97|SFRS4_MOUSE Splicing factor, arginine/serine-rich 4 60 8e-09
sp|Q09167|SFRS5_RAT Splicing factor, arginine/serine-rich 5... 54 5e-07
sp|Q13243|SFRS5_HUMAN Splicing factor, arginine/serine-rich... 54 5e-07
sp|O35326|SFRS5_MOUSE Splicing factor, arginine/serine-rich... 45 2e-04
sp|P78814|SRP2_SCHPO Pre-mRNA splicing factor srp2 42 0.002
sp|Q9P2K5|MYEF2_HUMAN Myelin expression factor 2 (MyEF-2) (... 35 0.17
sp|Q8C854|MYEF2_MOUSE Myelin expression factor 2 (MyEF-2) (... 35 0.17
>sp|Q13247|SFRS6_HUMAN Splicing factor, arginine/serine-rich 6 (Pre-mRNA splicing factor
SRP55)
Length = 344
Score = 63.9 bits (154), Expect = 4e-10
Identities = 29/48 (60%), Positives = 38/48 (79%)
Frame = +1
Query: 4 GEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHED 147
GEVT+ADAHK R N+GV+EF + SDMK A+DK DG E+ G N+++ ED
Sbjct: 134 GEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIED 181
>sp|P26686|SRR55_DROME Serine-arginine protein 55 (SRP55) (Enhancer of deformed) (52-kDa
bracketing protein) (B52 protein)
Length = 376
Score = 60.5 bits (145), Expect = 5e-09
Identities = 29/48 (60%), Positives = 37/48 (77%)
Frame = +1
Query: 4 GEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHED 147
GEVT+ADAHK R+N+GVVEF++ SDMK AI+K D EL G + + ED
Sbjct: 144 GEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLVED 191
>sp|Q08170|SFRS4_HUMAN Splicing factor, arginine/serine-rich 4 (Pre-mRNA splicing factor
SRP75) (SRP001LB)
Length = 494
Score = 59.7 bits (143), Expect = 8e-09
Identities = 27/48 (56%), Positives = 38/48 (79%)
Frame = +1
Query: 4 GEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHED 147
GEVT+ADAHK R+N+GV+EF + SDMK A++K DG E+ G +++ ED
Sbjct: 128 GEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED 175
>sp|Q8VE97|SFRS4_MOUSE Splicing factor, arginine/serine-rich 4
Length = 489
Score = 59.7 bits (143), Expect = 8e-09
Identities = 27/48 (56%), Positives = 38/48 (79%)
Frame = +1
Query: 4 GEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHED 147
GEVT+ADAHK R+N+GV+EF + SDMK A++K DG E+ G +++ ED
Sbjct: 128 GEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED 175
>sp|Q09167|SFRS5_RAT Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
SRP40) (Insulin-induced growth response protein CL-4)
(Delayed-early protein HRS)
Length = 269
Score = 53.9 bits (128), Expect = 5e-07
Identities = 25/47 (53%), Positives = 35/47 (74%)
Frame = +1
Query: 4 GEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHE 144
GEVTFADAH+ + N+GVVEF++ D+K AI+K G E+ G +K+ E
Sbjct: 132 GEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE 178
>sp|Q13243|SFRS5_HUMAN Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
SRP40) (Delayed-early protein HRS)
Length = 272
Score = 53.9 bits (128), Expect = 5e-07
Identities = 25/47 (53%), Positives = 35/47 (74%)
Frame = +1
Query: 4 GEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHE 144
GEVTFADAH+ + N+GVVEF++ D+K AI+K G E+ G +K+ E
Sbjct: 132 GEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE 178
>sp|O35326|SFRS5_MOUSE Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
SRP40) (Delayed-early protein HRS)
Length = 270
Score = 45.4 bits (106), Expect = 2e-04
Identities = 20/32 (62%), Positives = 27/32 (84%)
Frame = +1
Query: 4 GEVTFADAHKLRQNQGVVEFSNSSDMKAAIDK 99
GEVTFADAH+ + N+GVVEF++ D+K AI+K
Sbjct: 132 GEVTFADAHRPKLNEGVVEFASYGDLKNAIEK 163
>sp|P78814|SRP2_SCHPO Pre-mRNA splicing factor srp2
Length = 365
Score = 42.0 bits (97), Expect = 0.002
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +1
Query: 4 GEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHED 147
GE TF DAH+ GVVEFS DM+ A+ +G + G + + ED
Sbjct: 122 GEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTLRED 169
>sp|Q9P2K5|MYEF2_HUMAN Myelin expression factor 2 (MyEF-2) (MST156)
Length = 600
Score = 35.4 bits (80), Expect = 0.17
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +1
Query: 1 VGEVT----FADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHED 147
VGEVT F DA + GVVEF + +K A++ + Y+L G L + ED
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKED 176
>sp|Q8C854|MYEF2_MOUSE Myelin expression factor 2 (MyEF-2) (MEF-2)
Length = 591
Score = 35.4 bits (80), Expect = 0.17
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +1
Query: 1 VGEVT----FADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHED 147
VGEVT F DA + GVVEF + +K A++ + Y+L G L + ED
Sbjct: 115 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKED 167
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,487,848
Number of Sequences: 369166
Number of extensions: 809625
Number of successful extensions: 2398
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2394
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6873311200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)