Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_H02
(620 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7MYI2|DEF_PHOLL Peptide deformylase (PDF) (Polypeptide ... 33 0.58
sp|Q8Z1W9|DEF_SALTI Peptide deformylase (PDF) (Polypeptide ... 32 1.00
sp|Q8ZLM7|DEF_SALTY Peptide deformylase (PDF) (Polypeptide ... 30 3.8
sp|P0A6K3|DEF_ECOLI Peptide deformylase (PDF) (Polypeptide ... 30 4.9
sp|Q83PZ1|DEF_SHIFL Peptide deformylase (PDF) (Polypeptide ... 30 4.9
sp|Q9KST5|TRPC_VIBCH Tryptophan biosynthesis protein trpCF ... 30 6.4
sp|Q8NQ40|PYRF_CORGL Orotidine 5'-phosphate decarboxylase (... 29 8.4
>sp|Q7MYI2|DEF_PHOLL Peptide deformylase (PDF) (Polypeptide deformylase)
Length = 170
Score = 33.1 bits (74), Expect = 0.58
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Frame = +3
Query: 105 GVGLEANQVE--------NVQEVAKDRLVVSAPTVANDHVATGLSQGVLSLILNQRVLCR 260
G+GL A QV+ +V E +RLV+ P + TG+ +G LS+ + ++ R
Sbjct: 44 GIGLAATQVDIHQRIVVIDVSETRNERLVLINPELLEKSGETGIEEGCLSIPEQRALVPR 103
Query: 261 SGQLRMKMIQSPNR 302
+ ++++K + R
Sbjct: 104 AEKVKIKALDYNGR 117
>sp|Q8Z1W9|DEF_SALTI Peptide deformylase (PDF) (Polypeptide deformylase)
Length = 169
Score = 32.3 bits (72), Expect = 1.00
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Frame = +3
Query: 105 GVGLEANQVE--------NVQEVAKDRLVVSAPTVANDHVATGLSQGVLSLILNQRVLCR 260
G+GL A QV+ +V E +RLV+ P + TG+ +G LS+ + ++ R
Sbjct: 44 GIGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVPR 103
Query: 261 SGQLRMKMIQSPNRNLNRFQ 320
+ +++++ + +RN N F+
Sbjct: 104 AEKVKIRAL---DRNGNPFE 120
>sp|Q8ZLM7|DEF_SALTY Peptide deformylase (PDF) (Polypeptide deformylase)
Length = 169
Score = 30.4 bits (67), Expect = 3.8
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Frame = +3
Query: 105 GVGLEANQVE--------NVQEVAKDRLVVSAPTVANDHVATGLSQGVLSLILNQRVLCR 260
G+GL A QV+ +V E +RLV+ P + TG+ +G LS+ + ++ R
Sbjct: 44 GIGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVPR 103
Query: 261 SGQLRMKMIQSPNRNLNRFQ 320
+ +++++ + +R+ N F+
Sbjct: 104 AEKVKIRAL---DRDGNPFE 120
>sp|P0A6K3|DEF_ECOLI Peptide deformylase (PDF) (Polypeptide deformylase)
sp|P0A6K4|DEF_ECOL6 Peptide deformylase (PDF) (Polypeptide deformylase)
sp|P0A6K5|DEF_ECO57 Peptide deformylase (PDF) (Polypeptide deformylase)
Length = 169
Score = 30.0 bits (66), Expect = 4.9
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Frame = +3
Query: 105 GVGLEANQVE--------NVQEVAKDRLVVSAPTVANDHVATGLSQGVLSLILNQRVLCR 260
G+GL A QV+ +V E +RLV+ P + TG+ +G LS+ + ++ R
Sbjct: 44 GIGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVPR 103
Query: 261 SGQLRMKMI 287
+ +++++ +
Sbjct: 104 AEKVKIRAL 112
>sp|Q83PZ1|DEF_SHIFL Peptide deformylase (PDF) (Polypeptide deformylase)
Length = 169
Score = 30.0 bits (66), Expect = 4.9
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Frame = +3
Query: 105 GVGLEANQVE--------NVQEVAKDRLVVSAPTVANDHVATGLSQGVLSLILNQRVLCR 260
G+GL A QV+ +V E +RLV+ P + TG+ +G LS+ + ++ R
Sbjct: 44 GIGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVPR 103
Query: 261 SGQLRMKMI 287
+ +++++ +
Sbjct: 104 AEKVKIRAL 112
>sp|Q9KST5|TRPC_VIBCH Tryptophan biosynthesis protein trpCF [Includes: Indole-3-glycerol
phosphate synthase (IGPS);
N-(5'-phospho-ribosyl)anthranilate isomerase (PRAI)]
Length = 469
Score = 29.6 bits (65), Expect = 6.4
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = +3
Query: 198 VATGLSQGVLSLILNQRVLCRSGQLRMKMIQSPNRNLNRFQEVDLDQWKR 347
VA L GVL+ + N++ L R+ L+ K+I NRNL R DL++ K+
Sbjct: 167 VAHDLGMGVLTEVSNEQELKRAVDLQAKVIGINNRNL-RDLTTDLNRTKQ 215
>sp|Q8NQ40|PYRF_CORGL Orotidine 5'-phosphate decarboxylase (OMP decarboxylase) (OMPDCase)
(OMPdecase)
Length = 278
Score = 29.3 bits (64), Expect = 8.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 102 PGVGLEANQVENVQEVAKDRLVVSAPTVANDHVATG 209
PGVG + +V E+A D ++ P V+ +ATG
Sbjct: 220 PGVGAQGGTASDVDEIAGDMAHLAFPNVSRSILATG 255
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,995,782
Number of Sequences: 369166
Number of extensions: 538358
Number of successful extensions: 1601
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1597
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4877307000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)