Planaria EST Database

DrC_00937

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00937
         (487 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P62864|RS30_RAT  40S ribosomal protein S30 >gi|51338624|s...   100   2e-21
sp|P49689|RS30_ARATH  40S ribosomal protein S30                    91   2e-18
sp|Q9W6Y0|RS30_ORYLA  40S ribosomal protein S30                    90   3e-18
sp|O96269|RS30_PLAF7  40S ribosomal protein S30                    84   2e-16
sp|O42952|RS30_SCHPO  40S ribosomal protein S30                    82   7e-16
sp|Q12087|RS30_YEAST  40S ribosomal protein S30                    76   4e-14
sp|Q9Y9T9|RS30_AERPE  30S ribosomal protein S30                    40   0.002
sp|P32892|DRS1_YEAST  Probable ATP-dependent RNA helicase DRS1     33   0.46 
sp|Q17152|EF2_BLAHO  Elongation factor 2 (EF-2)                    32   0.78 
sp|P0A051|TNPA_STAAN  Transposase A from transposon Tn554 >g...    32   1.0  

>sp|P62864|RS30_RAT 40S ribosomal protein S30
 sp|P62863|RS30_PIG 40S ribosomal protein S30
 sp|P62867|RS30_MUSSI 40S ribosomal protein S30
 sp|P62862|RS30_MOUSE 40S ribosomal protein S30
 sp|P62860|RS30_CRIGR 40S ribosomal protein S30
 sp|P62866|RS30_BOVIN 40S ribosomal protein S30
 sp|P62861|RS30_HUMAN 40S ribosomal protein S30
          Length = 59

 Score =  100 bits (248), Expect = 2e-21
 Identities = 47/59 (79%), Positives = 53/59 (89%)
 Frame = +3

Query: 240 KVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKKGPNSNA 416
           KVHGSLARAGKV+ QTPKV KQEK+K+  GRAKRRMQYNRRFVNVVP  G+KKGPN+N+
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59

>sp|P49689|RS30_ARATH 40S ribosomal protein S30
          Length = 62

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 41/59 (69%), Positives = 51/59 (86%)
 Frame = +3

Query: 237 GKVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKKGPNSN 413
           GKVHGSLARAGKV+ QTPKV KQ+K+K+PRGRA +R+Q+NRRFV  V   G+K+GPNS+
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

>sp|Q9W6Y0|RS30_ORYLA 40S ribosomal protein S30
          Length = 59

 Score = 89.7 bits (221), Expect = 3e-18
 Identities = 41/59 (69%), Positives = 51/59 (86%)
 Frame = +3

Query: 240 KVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKKGPNSNA 416
           KVHGSLARAGKV+ QTP V+K E++++  GRAKRR+QYNRRFVNVVP  G+KKG N+N+
Sbjct: 1   KVHGSLARAGKVRGQTPNVDKHEEKEEEDGRAKRRIQYNRRFVNVVPTFGKKKGANANS 59

>sp|O96269|RS30_PLAF7 40S ribosomal protein S30
          Length = 58

 Score = 84.0 bits (206), Expect = 2e-16
 Identities = 43/60 (71%), Positives = 48/60 (80%)
 Frame = +3

Query: 237 GKVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKKGPNSNA 416
           GKVHGSLARAGKVKNQTPKV K +K+K+  GRAK+R  YNRRF +   N GRKKGPNS A
Sbjct: 2   GKVHGSLARAGKVKNQTPKVPKLDKKKRLTGRAKKRQLYNRRFSD---NGGRKKGPNSKA 58

>sp|O42952|RS30_SCHPO 40S ribosomal protein S30
          Length = 61

 Score = 82.0 bits (201), Expect = 7e-16
 Identities = 41/60 (68%), Positives = 48/60 (80%)
 Frame = +3

Query: 237 GKVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKKGPNSNA 416
           GKVHGSLARAGKVK+QTPKVEKQEK KQP+GRA +R+ Y RRFVNV    G K+  N ++
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61

>sp|Q12087|RS30_YEAST 40S ribosomal protein S30
          Length = 63

 Score = 76.3 bits (186), Expect = 4e-14
 Identities = 36/53 (67%), Positives = 44/53 (83%)
 Frame = +3

Query: 240 KVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKK 398
           KVHGSLARAGKVK+QTPKVEK EK K+P+GRA +R+ Y RRFVNV    G+++
Sbjct: 3   KVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVNVTLVNGKRR 55

>sp|Q9Y9T9|RS30_AERPE 30S ribosomal protein S30
          Length = 50

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 19/43 (44%), Positives = 28/43 (65%)
 Frame = +3

Query: 246 HGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNV 374
           HGSL +AGKV+ QTP++  ++K+  P  R K R++Y  R   V
Sbjct: 4   HGSLTKAGKVRKQTPRLPAKQKKNYP-PRLKNRLKYQVRIEKV 45

>sp|P32892|DRS1_YEAST Probable ATP-dependent RNA helicase DRS1
          Length = 752

 Score = 32.7 bits (73), Expect = 0.46
 Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
 Frame = +3

Query: 75  NETVADLKNFLASRDELPIFEIKCLVGSNILDNEIILSTLGEMATIDIEISLKGGKVHGS 254
           N+T+ D+        E+   E++   G N+L ++  +           E   K  KV G+
Sbjct: 632 NDTIEDILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQSESDKKNSKVLGA 691

Query: 255 LARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGR----KKGPNSN 413
           L+R  KV N      K+ KR++ +        Y +   + + +Q R    +K  NSN
Sbjct: 692 LSRNKKVTN-----SKKRKREEAKADGNGARSYRKTKTDRIADQERTFKKQKSTNSN 743

>sp|Q17152|EF2_BLAHO Elongation factor 2 (EF-2)
          Length = 867

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
 Frame = +3

Query: 18  LKMKLLINSVESFVHECDENETVADLKNFLASRDELPIFEIKCLVGSNILDNEIILSTLG 197
           + +K++  SV   V    E +   DL   +     L   +   +V +N    E I++  G
Sbjct: 498 MTIKMMKFSVSPVVRVAVEPKNPGDLPRLVEGLKRLSKSDPMVVVITNTEAGEHIIAGAG 557

Query: 198 EMATIDIEISLKGGKVHGSLARAGKVKNQTPKVEKQEKRKQPR---GRAKRRMQYNRRFV 368
           E+    +EI LK   +     +   +K   P VE +E   Q     G AK   ++NR +V
Sbjct: 558 EL---HLEICLKD--LQDDFMKGTPIKISPPVVEFRESVNQATTEPGLAKSPNKHNRLYV 612

Query: 369 NVVP 380
           NV P
Sbjct: 613 NVEP 616

>sp|P0A051|TNPA_STAAN Transposase A from transposon Tn554
 sp|P0A052|TNPA_STAAU Transposase A from transposon Tn554
 sp|P0A050|TNPA_STAAM Transposase A from transposon Tn554
          Length = 361

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 28/81 (34%), Positives = 40/81 (49%)
 Frame = +3

Query: 84  VADLKNFLASRDELPIFEIKCLVGSNILDNEIILSTLGEMATIDIEISLKGGKVHGSLAR 263
           V DL++  A R+E  +  I  +V S  LD    LS LGE  +ID+    KG    G L  
Sbjct: 90  VIDLQSKKAIREETTVNTILNVVMS-FLD---YLSRLGEFKSIDVFKQAKGRNFKGFLHH 145

Query: 264 AGKVKNQTPKVEKQEKRKQPR 326
             K + Q   ++ + K+KQ R
Sbjct: 146 VNKGRYQKNVLKLRVKKKQIR 166

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,860,933
Number of Sequences: 369166
Number of extensions: 787744
Number of successful extensions: 2384
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2381
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2921208590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00937

  1. Dr_sW_023_K20
  2. Dr_sW_016_I23
  3. Dr_sW_010_N21
  4. Dr_sW_002_M24
  5. Dr_sW_006_B20
  6. Dr_sW_007_A08
  7. Dr_sW_024_B23
  8. Dr_sW_003_N18
  9. Dr_sW_008_N03