Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_N18
(459 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62864|RS30_RAT 40S ribosomal protein S30 >gi|51338624|s... 100 2e-21
sp|P49689|RS30_ARATH 40S ribosomal protein S30 91 2e-18
sp|Q9W6Y0|RS30_ORYLA 40S ribosomal protein S30 90 3e-18
sp|O96269|RS30_PLAF7 40S ribosomal protein S30 84 1e-16
sp|O42952|RS30_SCHPO 40S ribosomal protein S30 82 6e-16
sp|Q12087|RS30_YEAST 40S ribosomal protein S30 76 3e-14
sp|Q9Y9T9|RS30_AERPE 30S ribosomal protein S30 40 0.002
sp|P32892|DRS1_YEAST Probable ATP-dependent RNA helicase DRS1 33 0.40
sp|P0A051|TNPA_STAAN Transposase A from transposon Tn554 >g... 32 0.88
sp|P02468|LAMC1_MOUSE Laminin gamma-1 chain precursor (Lami... 30 2.0
>sp|P62864|RS30_RAT 40S ribosomal protein S30
sp|P62863|RS30_PIG 40S ribosomal protein S30
sp|P62867|RS30_MUSSI 40S ribosomal protein S30
sp|P62862|RS30_MOUSE 40S ribosomal protein S30
sp|P62860|RS30_CRIGR 40S ribosomal protein S30
sp|P62866|RS30_BOVIN 40S ribosomal protein S30
sp|P62861|RS30_HUMAN 40S ribosomal protein S30
Length = 59
Score = 100 bits (248), Expect = 2e-21
Identities = 47/59 (79%), Positives = 53/59 (89%)
Frame = +2
Query: 212 KVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKKGPNSNA 388
KVHGSLARAGKV+ QTPKV KQEK+K+ GRAKRRMQYNRRFVNVVP G+KKGPN+N+
Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59
>sp|P49689|RS30_ARATH 40S ribosomal protein S30
Length = 62
Score = 90.5 bits (223), Expect = 2e-18
Identities = 41/59 (69%), Positives = 51/59 (86%)
Frame = +2
Query: 209 GKVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKKGPNSN 385
GKVHGSLARAGKV+ QTPKV KQ+K+K+PRGRA +R+Q+NRRFV V G+K+GPNS+
Sbjct: 2 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60
>sp|Q9W6Y0|RS30_ORYLA 40S ribosomal protein S30
Length = 59
Score = 89.7 bits (221), Expect = 3e-18
Identities = 41/59 (69%), Positives = 51/59 (86%)
Frame = +2
Query: 212 KVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKKGPNSNA 388
KVHGSLARAGKV+ QTP V+K E++++ GRAKRR+QYNRRFVNVVP G+KKG N+N+
Sbjct: 1 KVHGSLARAGKVRGQTPNVDKHEEKEEEDGRAKRRIQYNRRFVNVVPTFGKKKGANANS 59
>sp|O96269|RS30_PLAF7 40S ribosomal protein S30
Length = 58
Score = 84.0 bits (206), Expect = 1e-16
Identities = 43/60 (71%), Positives = 48/60 (80%)
Frame = +2
Query: 209 GKVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKKGPNSNA 388
GKVHGSLARAGKVKNQTPKV K +K+K+ GRAK+R YNRRF + N GRKKGPNS A
Sbjct: 2 GKVHGSLARAGKVKNQTPKVPKLDKKKRLTGRAKKRQLYNRRFSD---NGGRKKGPNSKA 58
>sp|O42952|RS30_SCHPO 40S ribosomal protein S30
Length = 61
Score = 82.0 bits (201), Expect = 6e-16
Identities = 41/60 (68%), Positives = 48/60 (80%)
Frame = +2
Query: 209 GKVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKKGPNSNA 388
GKVHGSLARAGKVK+QTPKVEKQEK KQP+GRA +R+ Y RRFVNV G K+ N ++
Sbjct: 2 GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61
>sp|Q12087|RS30_YEAST 40S ribosomal protein S30
Length = 63
Score = 76.3 bits (186), Expect = 3e-14
Identities = 36/53 (67%), Positives = 44/53 (83%)
Frame = +2
Query: 212 KVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKK 370
KVHGSLARAGKVK+QTPKVEK EK K+P+GRA +R+ Y RRFVNV G+++
Sbjct: 3 KVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVNVTLVNGKRR 55
>sp|Q9Y9T9|RS30_AERPE 30S ribosomal protein S30
Length = 50
Score = 40.4 bits (93), Expect = 0.002
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = +2
Query: 218 HGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNV 346
HGSL +AGKV+ QTP++ ++K+ P R K R++Y R V
Sbjct: 4 HGSLTKAGKVRKQTPRLPAKQKKNYP-PRLKNRLKYQVRIEKV 45
>sp|P32892|DRS1_YEAST Probable ATP-dependent RNA helicase DRS1
Length = 752
Score = 32.7 bits (73), Expect = 0.40
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Frame = +2
Query: 47 NETVADLKNFLASRDELPIFEIKCLVGSNILDNEIILSTLGEMATIDIEISLKGGKVHGS 226
N+T+ D+ E+ E++ G N+L ++ + E K KV G+
Sbjct: 632 NDTIEDILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQSESDKKNSKVLGA 691
Query: 227 LARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGR----KKGPNSN 385
L+R KV N K+ KR++ + Y + + + +Q R +K NSN
Sbjct: 692 LSRNKKVTN-----SKKRKREEAKADGNGARSYRKTKTDRIADQERTFKKQKSTNSN 743
>sp|P0A051|TNPA_STAAN Transposase A from transposon Tn554
sp|P0A052|TNPA_STAAU Transposase A from transposon Tn554
sp|P0A050|TNPA_STAAM Transposase A from transposon Tn554
Length = 361
Score = 31.6 bits (70), Expect = 0.88
Identities = 28/81 (34%), Positives = 40/81 (49%)
Frame = +2
Query: 56 VADLKNFLASRDELPIFEIKCLVGSNILDNEIILSTLGEMATIDIEISLKGGKVHGSLAR 235
V DL++ A R+E + I +V S LD LS LGE +ID+ KG G L
Sbjct: 90 VIDLQSKKAIREETTVNTILNVVMS-FLD---YLSRLGEFKSIDVFKQAKGRNFKGFLHH 145
Query: 236 AGKVKNQTPKVEKQEKRKQPR 298
K + Q ++ + K+KQ R
Sbjct: 146 VNKGRYQKNVLKLRVKKKQIR 166
>sp|P02468|LAMC1_MOUSE Laminin gamma-1 chain precursor (Laminin B2 chain)
Length = 1607
Score = 30.4 bits (67), Expect = 2.0
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 4/117 (3%)
Frame = +2
Query: 11 NSVESFVHECDENETVADLKNFLASRDELPIFEIKCLVGSNILDNEIILSTLGEMATIDI 190
N ++ + D++ +A + + A EL + K V S + +L LG++ T+D+
Sbjct: 1471 NELKRKQDDADQDMMMAGMASQAAQEAELNARKAKNSVSSLLSQLNNLLDQLGQLDTVDL 1530
Query: 191 EISLKGGKVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRR----MQYNRRFVNVV 349
K ++ GSL K K++ + K A+++ M YNR ++
Sbjct: 1531 N---KLNEIEGSL---NKAKDEMKASDLDRKVSDLESEARKQEAAIMDYNRDIAEII 1581
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,021,740
Number of Sequences: 369166
Number of extensions: 742419
Number of successful extensions: 2262
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2259
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2534533995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)