Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_B23
(405 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62864|RS30_RAT 40S ribosomal protein S30 >gi|51338624|s... 100 1e-21
sp|P49689|RS30_ARATH 40S ribosomal protein S30 91 1e-18
sp|Q9W6Y0|RS30_ORYLA 40S ribosomal protein S30 90 2e-18
sp|O96269|RS30_PLAF7 40S ribosomal protein S30 84 1e-16
sp|O42952|RS30_SCHPO 40S ribosomal protein S30 82 4e-16
sp|Q12087|RS30_YEAST 40S ribosomal protein S30 76 2e-14
sp|Q9Y9T9|RS30_AERPE 30S ribosomal protein S30 40 0.001
sp|P32892|DRS1_YEAST Probable ATP-dependent RNA helicase DRS1 33 0.28
sp|P0A051|TNPA_STAAN Transposase A from transposon Tn554 >g... 32 0.63
sp|P28468|HOX1_HALRO Homeobox protein AHox1 30 1.8
>sp|P62864|RS30_RAT 40S ribosomal protein S30
sp|P62863|RS30_PIG 40S ribosomal protein S30
sp|P62867|RS30_MUSSI 40S ribosomal protein S30
sp|P62862|RS30_MOUSE 40S ribosomal protein S30
sp|P62860|RS30_CRIGR 40S ribosomal protein S30
sp|P62866|RS30_BOVIN 40S ribosomal protein S30
sp|P62861|RS30_HUMAN 40S ribosomal protein S30
Length = 59
Score = 100 bits (248), Expect = 1e-21
Identities = 47/59 (79%), Positives = 53/59 (89%)
Frame = +1
Query: 193 KVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKKGPNSNA 369
KVHGSLARAGKV+ QTPKV KQEK+K+ GRAKRRMQYNRRFVNVVP G+KKGPN+N+
Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59
>sp|P49689|RS30_ARATH 40S ribosomal protein S30
Length = 62
Score = 90.5 bits (223), Expect = 1e-18
Identities = 41/59 (69%), Positives = 51/59 (86%)
Frame = +1
Query: 190 GKVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKKGPNSN 366
GKVHGSLARAGKV+ QTPKV KQ+K+K+PRGRA +R+Q+NRRFV V G+K+GPNS+
Sbjct: 2 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60
>sp|Q9W6Y0|RS30_ORYLA 40S ribosomal protein S30
Length = 59
Score = 89.7 bits (221), Expect = 2e-18
Identities = 41/59 (69%), Positives = 51/59 (86%)
Frame = +1
Query: 193 KVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKKGPNSNA 369
KVHGSLARAGKV+ QTP V+K E++++ GRAKRR+QYNRRFVNVVP G+KKG N+N+
Sbjct: 1 KVHGSLARAGKVRGQTPNVDKHEEKEEEDGRAKRRIQYNRRFVNVVPTFGKKKGANANS 59
>sp|O96269|RS30_PLAF7 40S ribosomal protein S30
Length = 58
Score = 84.0 bits (206), Expect = 1e-16
Identities = 43/60 (71%), Positives = 48/60 (80%)
Frame = +1
Query: 190 GKVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKKGPNSNA 369
GKVHGSLARAGKVKNQTPKV K +K+K+ GRAK+R YNRRF + N GRKKGPNS A
Sbjct: 2 GKVHGSLARAGKVKNQTPKVPKLDKKKRLTGRAKKRQLYNRRFSD---NGGRKKGPNSKA 58
>sp|O42952|RS30_SCHPO 40S ribosomal protein S30
Length = 61
Score = 82.0 bits (201), Expect = 4e-16
Identities = 41/60 (68%), Positives = 48/60 (80%)
Frame = +1
Query: 190 GKVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKKGPNSNA 369
GKVHGSLARAGKVK+QTPKVEKQEK KQP+GRA +R+ Y RRFVNV G K+ N ++
Sbjct: 2 GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61
>sp|Q12087|RS30_YEAST 40S ribosomal protein S30
Length = 63
Score = 76.3 bits (186), Expect = 2e-14
Identities = 36/53 (67%), Positives = 44/53 (83%)
Frame = +1
Query: 193 KVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKK 351
KVHGSLARAGKVK+QTPKVEK EK K+P+GRA +R+ Y RRFVNV G+++
Sbjct: 3 KVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVNVTLVNGKRR 55
>sp|Q9Y9T9|RS30_AERPE 30S ribosomal protein S30
Length = 50
Score = 40.4 bits (93), Expect = 0.001
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = +1
Query: 199 HGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNV 327
HGSL +AGKV+ QTP++ ++K+ P R K R++Y R V
Sbjct: 4 HGSLTKAGKVRKQTPRLPAKQKKNYP-PRLKNRLKYQVRIEKV 45
>sp|P32892|DRS1_YEAST Probable ATP-dependent RNA helicase DRS1
Length = 752
Score = 32.7 bits (73), Expect = 0.28
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Frame = +1
Query: 28 NETVADLKNFLASRDELPIFEIKCLVGSNILDNEIILSTLGEMATIDIEISLKGGKVHGS 207
N+T+ D+ E+ E++ G N+L ++ + E K KV G+
Sbjct: 632 NDTIEDILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQSESDKKNSKVLGA 691
Query: 208 LARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGR----KKGPNSN 366
L+R KV N K+ KR++ + Y + + + +Q R +K NSN
Sbjct: 692 LSRNKKVTN-----SKKRKREEAKADGNGARSYRKTKTDRIADQERTFKKQKSTNSN 743
>sp|P0A051|TNPA_STAAN Transposase A from transposon Tn554
sp|P0A052|TNPA_STAAU Transposase A from transposon Tn554
sp|P0A050|TNPA_STAAM Transposase A from transposon Tn554
Length = 361
Score = 31.6 bits (70), Expect = 0.63
Identities = 28/81 (34%), Positives = 40/81 (49%)
Frame = +1
Query: 37 VADLKNFLASRDELPIFEIKCLVGSNILDNEIILSTLGEMATIDIEISLKGGKVHGSLAR 216
V DL++ A R+E + I +V S LD LS LGE +ID+ KG G L
Sbjct: 90 VIDLQSKKAIREETTVNTILNVVMS-FLD---YLSRLGEFKSIDVFKQAKGRNFKGFLHH 145
Query: 217 AGKVKNQTPKVEKQEKRKQPR 279
K + Q ++ + K+KQ R
Sbjct: 146 VNKGRYQKNVLKLRVKKKQIR 166
>sp|P28468|HOX1_HALRO Homeobox protein AHox1
Length = 741
Score = 30.0 bits (66), Expect = 1.8
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 232 NQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKK 351
+Q P E Q + ++ RG K+R ++NR +++ +G +K
Sbjct: 623 SQNPHSETQNRSEEVRGTVKKRRKWNRAVFSLMQRRGLEK 662
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,947,222
Number of Sequences: 369166
Number of extensions: 665534
Number of successful extensions: 2011
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2008
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1809034200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)