Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_B20
(302 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62864|RS30_RAT 40S ribosomal protein S30 >gi|51338624|s... 100 1e-21
sp|P49689|RS30_ARATH 40S ribosomal protein S30 91 1e-18
sp|Q9W6Y0|RS30_ORYLA 40S ribosomal protein S30 90 2e-18
sp|O96269|RS30_PLAF7 40S ribosomal protein S30 84 1e-16
sp|O42952|RS30_SCHPO 40S ribosomal protein S30 82 4e-16
sp|Q12087|RS30_YEAST 40S ribosomal protein S30 76 2e-14
sp|Q9Y9T9|RS30_AERPE 30S ribosomal protein S30 40 0.001
sp|P28468|HOX1_HALRO Homeobox protein AHox1 30 1.7
sp|Q9PKR2|RS9_CHLMU 30S ribosomal protein S9 30 1.7
sp|O84128|RS9_CHLTR 30S ribosomal protein S9 30 2.3
>sp|P62864|RS30_RAT 40S ribosomal protein S30
sp|P62863|RS30_PIG 40S ribosomal protein S30
sp|P62867|RS30_MUSSI 40S ribosomal protein S30
sp|P62862|RS30_MOUSE 40S ribosomal protein S30
sp|P62860|RS30_CRIGR 40S ribosomal protein S30
sp|P62866|RS30_BOVIN 40S ribosomal protein S30
sp|P62861|RS30_HUMAN 40S ribosomal protein S30
Length = 59
Score = 100 bits (248), Expect = 1e-21
Identities = 47/59 (79%), Positives = 53/59 (89%)
Frame = +3
Query: 90 KVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKKGPNSNA 266
KVHGSLARAGKV+ QTPKV KQEK+K+ GRAKRRMQYNRRFVNVVP G+KKGPN+N+
Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59
>sp|P49689|RS30_ARATH 40S ribosomal protein S30
Length = 62
Score = 90.5 bits (223), Expect = 1e-18
Identities = 41/59 (69%), Positives = 51/59 (86%)
Frame = +3
Query: 87 GKVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKKGPNSN 263
GKVHGSLARAGKV+ QTPKV KQ+K+K+PRGRA +R+Q+NRRFV V G+K+GPNS+
Sbjct: 2 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60
>sp|Q9W6Y0|RS30_ORYLA 40S ribosomal protein S30
Length = 59
Score = 89.7 bits (221), Expect = 2e-18
Identities = 41/59 (69%), Positives = 51/59 (86%)
Frame = +3
Query: 90 KVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKKGPNSNA 266
KVHGSLARAGKV+ QTP V+K E++++ GRAKRR+QYNRRFVNVVP G+KKG N+N+
Sbjct: 1 KVHGSLARAGKVRGQTPNVDKHEEKEEEDGRAKRRIQYNRRFVNVVPTFGKKKGANANS 59
>sp|O96269|RS30_PLAF7 40S ribosomal protein S30
Length = 58
Score = 84.0 bits (206), Expect = 1e-16
Identities = 43/60 (71%), Positives = 48/60 (80%)
Frame = +3
Query: 87 GKVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKKGPNSNA 266
GKVHGSLARAGKVKNQTPKV K +K+K+ GRAK+R YNRRF + N GRKKGPNS A
Sbjct: 2 GKVHGSLARAGKVKNQTPKVPKLDKKKRLTGRAKKRQLYNRRFSD---NGGRKKGPNSKA 58
>sp|O42952|RS30_SCHPO 40S ribosomal protein S30
Length = 61
Score = 82.0 bits (201), Expect = 4e-16
Identities = 41/60 (68%), Positives = 48/60 (80%)
Frame = +3
Query: 87 GKVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKKGPNSNA 266
GKVHGSLARAGKVK+QTPKVEKQEK KQP+GRA +R+ Y RRFVNV G K+ N ++
Sbjct: 2 GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61
>sp|Q12087|RS30_YEAST 40S ribosomal protein S30
Length = 63
Score = 76.3 bits (186), Expect = 2e-14
Identities = 36/53 (67%), Positives = 44/53 (83%)
Frame = +3
Query: 90 KVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKK 248
KVHGSLARAGKVK+QTPKVEK EK K+P+GRA +R+ Y RRFVNV G+++
Sbjct: 3 KVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVNVTLVNGKRR 55
>sp|Q9Y9T9|RS30_AERPE 30S ribosomal protein S30
Length = 50
Score = 40.4 bits (93), Expect = 0.001
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = +3
Query: 96 HGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNV 224
HGSL +AGKV+ QTP++ ++K+ P R K R++Y R V
Sbjct: 4 HGSLTKAGKVRKQTPRLPAKQKKNYP-PRLKNRLKYQVRIEKV 45
>sp|P28468|HOX1_HALRO Homeobox protein AHox1
Length = 741
Score = 30.0 bits (66), Expect = 1.7
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +3
Query: 129 NQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKK 248
+Q P E Q + ++ RG K+R ++NR +++ +G +K
Sbjct: 623 SQNPHSETQNRSEEVRGTVKKRRKWNRAVFSLMQRRGLEK 662
>sp|Q9PKR2|RS9_CHLMU 30S ribosomal protein S9
Length = 133
Score = 30.0 bits (66), Expect = 1.7
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 19/79 (24%)
Frame = +3
Query: 33 LSTLGEMATIDIEISLKGGKVHG-------SLARAGKVKNQTPKVE------------KQ 155
L LG++ + D+ I + GG V G LARA + + K E K+
Sbjct: 55 LKMLGDVNSFDLIIRVSGGGVQGQVIATRLGLARAVLQEKEDMKQELKSQGFLTRDPRKK 114
Query: 156 EKRKQPRGRAKRRMQYNRR 212
E++K R +A++ Q+++R
Sbjct: 115 ERKKYGRKKARKSFQFSKR 133
>sp|O84128|RS9_CHLTR 30S ribosomal protein S9
Length = 129
Score = 29.6 bits (65), Expect = 2.3
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 19/79 (24%)
Frame = +3
Query: 33 LSTLGEMATIDIEISLKGGKVHG-------SLARAGKVKNQTPKVE------------KQ 155
L LG++ + D+ I + GG V G LARA + + K E K+
Sbjct: 51 LRMLGDVNSFDLIIRVSGGGVQGQVIATRLGLARAVLQEKEDMKQELKAQGFLTRDPRKK 110
Query: 156 EKRKQPRGRAKRRMQYNRR 212
E++K R +A++ Q+++R
Sbjct: 111 ERKKYGRKKARKSFQFSKR 129
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,933,082
Number of Sequences: 369166
Number of extensions: 472159
Number of successful extensions: 1441
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1723856215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)