Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_N21
(183 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62864|RS30_RAT 40S ribosomal protein S30 >gi|51338624|s... 81 8e-16
sp|Q9W6Y0|RS30_ORYLA 40S ribosomal protein S30 70 1e-12
sp|P49689|RS30_ARATH 40S ribosomal protein S30 69 3e-12
sp|O96269|RS30_PLAF7 40S ribosomal protein S30 62 3e-10
sp|O42952|RS30_SCHPO 40S ribosomal protein S30 60 1e-09
sp|Q12087|RS30_YEAST 40S ribosomal protein S30 57 1e-08
sp|P28468|HOX1_HALRO Homeobox protein AHox1 30 1.7
>sp|P62864|RS30_RAT 40S ribosomal protein S30
sp|P62863|RS30_PIG 40S ribosomal protein S30
sp|P62867|RS30_MUSSI 40S ribosomal protein S30
sp|P62862|RS30_MOUSE 40S ribosomal protein S30
sp|P62860|RS30_CRIGR 40S ribosomal protein S30
sp|P62866|RS30_BOVIN 40S ribosomal protein S30
sp|P62861|RS30_HUMAN 40S ribosomal protein S30
Length = 59
Score = 80.9 bits (198), Expect = 8e-16
Identities = 37/49 (75%), Positives = 43/49 (87%)
Frame = +1
Query: 1 KVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKKGPNSNA 147
KV+ QTPKV KQEK+K+ GRAKRRMQYNRRFVNVVP G+KKGPN+N+
Sbjct: 11 KVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59
>sp|Q9W6Y0|RS30_ORYLA 40S ribosomal protein S30
Length = 59
Score = 70.5 bits (171), Expect = 1e-12
Identities = 31/49 (63%), Positives = 41/49 (83%)
Frame = +1
Query: 1 KVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKKGPNSNA 147
KV+ QTP V+K E++++ GRAKRR+QYNRRFVNVVP G+KKG N+N+
Sbjct: 11 KVRGQTPNVDKHEEKEEEDGRAKRRIQYNRRFVNVVPTFGKKKGANANS 59
>sp|P49689|RS30_ARATH 40S ribosomal protein S30
Length = 62
Score = 68.9 bits (167), Expect = 3e-12
Identities = 30/48 (62%), Positives = 40/48 (83%)
Frame = +1
Query: 1 KVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKKGPNSN 144
KV+ QTPKV KQ+K+K+PRGRA +R+Q+NRRFV V G+K+GPNS+
Sbjct: 13 KVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60
>sp|O96269|RS30_PLAF7 40S ribosomal protein S30
Length = 58
Score = 62.4 bits (150), Expect = 3e-10
Identities = 32/49 (65%), Positives = 37/49 (75%)
Frame = +1
Query: 1 KVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKKGPNSNA 147
KVKNQTPKV K +K+K+ GRAK+R YNRRF + N GRKKGPNS A
Sbjct: 13 KVKNQTPKVPKLDKKKRLTGRAKKRQLYNRRFSD---NGGRKKGPNSKA 58
>sp|O42952|RS30_SCHPO 40S ribosomal protein S30
Length = 61
Score = 60.5 bits (145), Expect = 1e-09
Identities = 30/49 (61%), Positives = 37/49 (75%)
Frame = +1
Query: 1 KVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKKGPNSNA 147
KVK+QTPKVEKQEK KQP+GRA +R+ Y RRFVNV G K+ N ++
Sbjct: 13 KVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61
>sp|Q12087|RS30_YEAST 40S ribosomal protein S30
Length = 63
Score = 57.0 bits (136), Expect = 1e-08
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = +1
Query: 1 KVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKK 129
KVK+QTPKVEK EK K+P+GRA +R+ Y RRFVNV G+++
Sbjct: 13 KVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVNVTLVNGKRR 55
>sp|P28468|HOX1_HALRO Homeobox protein AHox1
Length = 741
Score = 30.0 bits (66), Expect = 1.7
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 10 NQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGRKK 129
+Q P E Q + ++ RG K+R ++NR +++ +G +K
Sbjct: 623 SQNPHSETQNRSEEVRGTVKKRRKWNRAVFSLMQRRGLEK 662
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.313 0.130 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,410,136
Number of Sequences: 369166
Number of extensions: 243386
Number of successful extensions: 574
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 68,354,980
effective HSP length: 33
effective length of database: 62,258,725
effective search space used: 1680985575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)