Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_K20
(452 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62864|RS30_RAT 40S ribosomal protein S30 >gi|51338624|s... 97 2e-20
sp|P49689|RS30_ARATH 40S ribosomal protein S30 90 3e-18
sp|Q9W6Y0|RS30_ORYLA 40S ribosomal protein S30 86 3e-17
sp|O96269|RS30_PLAF7 40S ribosomal protein S30 82 5e-16
sp|O42952|RS30_SCHPO 40S ribosomal protein S30 80 2e-15
sp|Q12087|RS30_YEAST 40S ribosomal protein S30 75 5e-14
sp|Q9Y9T9|RS30_AERPE 30S ribosomal protein S30 40 0.002
sp|P32892|DRS1_YEAST Probable ATP-dependent RNA helicase DRS1 33 0.38
sp|Q17152|EF2_BLAHO Elongation factor 2 (EF-2) 32 0.65
sp|P28468|HOX1_HALRO Homeobox protein AHox1 32 0.85
>sp|P62864|RS30_RAT 40S ribosomal protein S30
sp|P62863|RS30_PIG 40S ribosomal protein S30
sp|P62867|RS30_MUSSI 40S ribosomal protein S30
sp|P62862|RS30_MOUSE 40S ribosomal protein S30
sp|P62860|RS30_CRIGR 40S ribosomal protein S30
sp|P62866|RS30_BOVIN 40S ribosomal protein S30
sp|P62861|RS30_HUMAN 40S ribosomal protein S30
Length = 59
Score = 96.7 bits (239), Expect = 2e-20
Identities = 45/59 (76%), Positives = 53/59 (89%)
Frame = +3
Query: 240 KVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGREKGPNSHA 416
KVHGSLARAGKV+ QTPKV KQEK+K+ GRAKRRMQYNRRFVNVVP G++KGPN+++
Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59
>sp|P49689|RS30_ARATH 40S ribosomal protein S30
Length = 62
Score = 89.7 bits (221), Expect = 3e-18
Identities = 41/61 (67%), Positives = 51/61 (83%)
Frame = +3
Query: 237 GKVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGREKGPNSHA 416
GKVHGSLARAGKV+ QTPKV KQ+K+K+PRGRA +R+Q+NRRFV V G+++GPNS
Sbjct: 2 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSSE 61
Query: 417 K 419
K
Sbjct: 62 K 62
>sp|Q9W6Y0|RS30_ORYLA 40S ribosomal protein S30
Length = 59
Score = 86.3 bits (212), Expect = 3e-17
Identities = 39/59 (66%), Positives = 51/59 (86%)
Frame = +3
Query: 240 KVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGREKGPNSHA 416
KVHGSLARAGKV+ QTP V+K E++++ GRAKRR+QYNRRFVNVVP G++KG N+++
Sbjct: 1 KVHGSLARAGKVRGQTPNVDKHEEKEEEDGRAKRRIQYNRRFVNVVPTFGKKKGANANS 59
>sp|O96269|RS30_PLAF7 40S ribosomal protein S30
Length = 58
Score = 82.0 bits (201), Expect = 5e-16
Identities = 42/60 (70%), Positives = 48/60 (80%)
Frame = +3
Query: 237 GKVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGREKGPNSHA 416
GKVHGSLARAGKVKNQTPKV K +K+K+ GRAK+R YNRRF + N GR+KGPNS A
Sbjct: 2 GKVHGSLARAGKVKNQTPKVPKLDKKKRLTGRAKKRQLYNRRFSD---NGGRKKGPNSKA 58
>sp|O42952|RS30_SCHPO 40S ribosomal protein S30
Length = 61
Score = 80.1 bits (196), Expect = 2e-15
Identities = 40/57 (70%), Positives = 46/57 (80%)
Frame = +3
Query: 237 GKVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGREKGPN 407
GKVHGSLARAGKVK+QTPKVEKQEK KQP+GRA +R+ Y RRFVNV G ++ N
Sbjct: 2 GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMN 58
>sp|Q12087|RS30_YEAST 40S ribosomal protein S30
Length = 63
Score = 75.5 bits (184), Expect = 5e-14
Identities = 36/53 (67%), Positives = 43/53 (81%)
Frame = +3
Query: 240 KVHGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGREK 398
KVHGSLARAGKVK+QTPKVEK EK K+P+GRA +R+ Y RRFVNV G+ +
Sbjct: 3 KVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVNVTLVNGKRR 55
>sp|Q9Y9T9|RS30_AERPE 30S ribosomal protein S30
Length = 50
Score = 40.4 bits (93), Expect = 0.002
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = +3
Query: 246 HGSLARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNV 374
HGSL +AGKV+ QTP++ ++K+ P R K R++Y R V
Sbjct: 4 HGSLTKAGKVRKQTPRLPAKQKKNYP-PRLKNRLKYQVRIEKV 45
>sp|P32892|DRS1_YEAST Probable ATP-dependent RNA helicase DRS1
Length = 752
Score = 32.7 bits (73), Expect = 0.38
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 4/119 (3%)
Frame = +3
Query: 75 NETVADLKNFLASRDELPIFEIKCLVGSNILDNEIILSTLGEMATIDIEISLKGGKVHGS 254
N+T+ D+ E+ E++ G N+L ++ + E K KV G+
Sbjct: 632 NDTIEDILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQSESDKKNSKVLGA 691
Query: 255 LARAGKVKNQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGR----EKGPNSHAK 419
L+R KV N K+ KR++ + Y + + + +Q R +K NS+ K
Sbjct: 692 LSRNKKVTN-----SKKRKREEAKADGNGARSYRKTKTDRIADQERTFKKQKSTNSNKK 745
>sp|Q17152|EF2_BLAHO Elongation factor 2 (EF-2)
Length = 867
Score = 32.0 bits (71), Expect = 0.65
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
Frame = +3
Query: 18 LKMKLLINSVESFVHECDENETVADLKNFLASRDELPIFEIKCLVGSNILDNEIILSTLG 197
+ +K++ SV V E + DL + L + +V +N E I++ G
Sbjct: 498 MTIKMMKFSVSPVVRVAVEPKNPGDLPRLVEGLKRLSKSDPMVVVITNTEAGEHIIAGAG 557
Query: 198 EMATIDIEISLKGGKVHGSLARAGKVKNQTPKVEKQEKRKQPR---GRAKRRMQYNRRFV 368
E+ +EI LK + + +K P VE +E Q G AK ++NR +V
Sbjct: 558 EL---HLEICLKD--LQDDFMKGTPIKISPPVVEFRESVNQATTEPGLAKSPNKHNRLYV 612
Query: 369 NVVP 380
NV P
Sbjct: 613 NVEP 616
>sp|P28468|HOX1_HALRO Homeobox protein AHox1
Length = 741
Score = 31.6 bits (70), Expect = 0.85
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 279 NQTPKVEKQEKRKQPRGRAKRRMQYNRRFVNVVPNQGREK 398
+Q P E Q + ++ RG K+R ++NR +++ +G EK
Sbjct: 623 SQNPHSETQNRSEEVRGTVKKRRKWNRAVFSLMQRRGLEK 662
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,690,021
Number of Sequences: 369166
Number of extensions: 761302
Number of successful extensions: 2346
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2342
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2435140505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)