Planarian EST Database

DrC_00921

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00921 GAGTCCAAATGAATATTTCCAAACAACAAATTCTCGATGAAGAATTTTGGTTTATTCAAA AATTTTCTAGAATGTTGGAATTGGCAAATTTCAGTGAATTGAATGGCCACGACATAAAGA AATGGTTCCATAATCAGGGGGGATTCACCGCGATGCAGGTGTGGGTCGATCCTGGGAAAT ACGACGTTCTGAAGCTGTGGCTGCTCGGCAGGGACGCTATTCGCGAGGATCGGGGGGTTT TTGAGCGGTTTGTGGGGAAATATCTGCCGATTGGAGGGAACCATTTTCGATCGGGCCAGC AGTACAAACGCGTGGTGGTGGCGGCGCGTGCCAAGCGGGCCAGCAAGGTGCATCTCAAGA TGTTCAAGGACCTCTCGGAGGGAGAATTGATCCACACGGTGCCGGAGGTGACGATTGGAC AATCTGTGATCGACAATTCCCTCCTCACATGGACCGCCTTGCTGTGCGCTGTTGGCTGGG GGTCTCATTTGATGCTGCCCGCTGCAGTGCTCGACTCGGGCTGGCTCAGTTCCACCCATC ATTTGGCTGTCTCGTTGGGCGTTCTGTCGGGCGCGGTTGGACTGGCGCACTGGACTGTGA TACAAAACAAGAAATCAAATTACTGGAAGTGGCGCTCTGAACTGAATTATCGATCGATCA TAGCCAACAACAGAGGGGTGATCAATGTATTAGGGGATCGGGTCCAAGATGAGATATTCA AGGAGTGTTTGCTTGCTTATATTCACATTCTTGGCCAACCAAATGGAGTTAAACAAGAAG ATTTGGAACTGCTTGTGCGAAACTGGGCTATAGAAAATTGTGATGATAATTTCAAGAATG CATATTCTGATATGCAATTAAATCTTTCGGAGGCCTTGTCGATGTTGCGTCAGTTGAACA TTATTAGCCTAGATCAATCAAGTCAATTACTGACAGCCAAAACACTTGAACAGTCTGCTG CGGCGTTAGGAATAGAATTCGACGCTTCCAATTTATCGGTAGATCTTGACGGTAACCCAG TGATCAGAAATGATGACGTCAATCGAGCTGTTGATCAACCTATTGCTGAAGGATATGAAA AGATTCGACGAACAGCAAGTGAAGACAAATGATATTTTAAATATCAATCTTAGTTCTTTT TTCGTT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00921
         (1146 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q16134|ETFD_HUMAN  Electron transfer flavoprotein-ubiquin...    32   2.6  
sp|Q01822|HXD1_MOUSE  Homeobox protein Hox-D1 (Hox-4.9)            32   4.5  
sp|Q8ZQD5|FTSK_SALTY  DNA translocase ftsK                         32   4.5  
sp|P55404|TRBG_RHISN  PROBABLE CONJUGAL TRANSFER PROTEIN TRB...    31   5.8  
sp|Q8Z814|FTSK_SALTI  DNA translocase ftsK                         31   5.8  
sp|O00258|WRB_HUMAN  Tryptophan-rich protein (Congenital hea...    31   7.6  
sp|Q9GZZ0|HXD1_HUMAN  Homeobox protein Hox-D1                      31   7.6  
sp|P66666|RNC_MYCTU  Ribonuclease III (RNase III) >gi|540392...    31   7.6  
sp|Q08820|HXD1_XENLA  Homeobox protein Hox-D1 (Hox.lab1)           31   7.6  
sp|P55931|ETFD_PIG  Electron transfer flavoprotein-ubiquinon...    31   7.6

>sp|Q16134|ETFD_HUMAN Electron transfer flavoprotein-ubiquinone oxidoreductase,
           mitochondrial precursor (ETF-QO) (ETF-ubiquinone
           oxidoreductase) (ETF dehydrogenase)
           (Electron-transferring-flavoprotein dehydrogenase)
          Length = 617

 Score = 32.3 bits (72), Expect = 2.6
 Identities = 21/80 (26%), Positives = 37/80 (46%)
 Frame = +3

Query: 480 GSHLMLPAAVLDSGWLSSTHHLAVSLGVLSGAVGLAHWTVIQNKKSNYWKWRSELNYRSI 659
           G+H  + + +L +    S  +   S  + S  +GL H T  ++   N W W+   + R+I
Sbjct: 399 GTHTAMKSGILAA---ESIFNQLTSENLQSKTIGL-HVTEYEDNLKNSWVWKELYSVRNI 454

Query: 660 IANNRGVINVLGDRVQDEIF 719
             +  GV+ V G  +   IF
Sbjct: 455 RPSCHGVLGVYGGMIYTGIF 474

>sp|Q01822|HXD1_MOUSE Homeobox protein Hox-D1 (Hox-4.9)
          Length = 327

 Score = 31.6 bits (70), Expect = 4.5
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
 Frame = +3

Query: 3   VQMNISKQQI--LDEEFWFIQKFSRM--LELANFSELNGHDIKKWFHNQ 137
           ++ N S +Q+  L++EF F +  +R   +E+AN  +LN   +K WF N+
Sbjct: 231 IRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLQLNDTQVKIWFQNR 279

>sp|Q8ZQD5|FTSK_SALTY DNA translocase ftsK
          Length = 1351

 Score = 31.6 bits (70), Expect = 4.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 257 PHKPLKNPPILANSVPAEQPQLQNVVFPRIDPHLHRGESPLIMEP 123
           PH+PL  P ++  S P +QP     V P+  P   + + P+  +P
Sbjct: 709 PHEPLFTPGVMPESTPVQQP-----VAPQPQPQYQQPQQPVAPQP 748

>sp|P55404|TRBG_RHISN PROBABLE CONJUGAL TRANSFER PROTEIN TRBG preCURSOR
          Length = 270

 Score = 31.2 bits (69), Expect = 5.8
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -3

Query: 1120 LKYHLSSLAVRRIFSYPSAIG*STARLTSSFLITGLPSRSTDKLEASNSIPNAA 959
            LK H S    R  F YP  +    A + S     G+P  + DKL  S S+  +A
Sbjct: 139  LKSHPSQYMARVGFEYPEDVSTKLADINSRLETGGIPGTAPDKLNFSYSVSGSA 192

>sp|Q8Z814|FTSK_SALTI DNA translocase ftsK
          Length = 1343

 Score = 31.2 bits (69), Expect = 5.8
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = -2

Query: 257 PHKPLKNPPILANSVP-----AEQPQLQNVVFPRIDPHLHRGESPLIMEP 123
           PH+PL  P ++  S P     A QPQ Q  V P+  P   + + P+  +P
Sbjct: 706 PHEPLFTPGVMPESTPVQQPVAPQPQYQQPVAPQ--PQYQQPQQPVASQP 753

>sp|O00258|WRB_HUMAN Tryptophan-rich protein (Congenital heart disease 5 protein)
          Length = 174

 Score = 30.8 bits (68), Expect = 7.6
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +3

Query: 456 ALLCAVGWGSHLMLPAAVLDSGWLSSTHHLAVSLGVLSGAVGLAHWTVIQNK 611
           AL+ ++ W  +  +P AV+ S W++    L      ++G VG+  W ++ NK
Sbjct: 114 ALMISLIW-KYYSVPVAVVPSKWITPLDRLVAFPTRVAGGVGITCWILVCNK 164

>sp|Q9GZZ0|HXD1_HUMAN Homeobox protein Hox-D1
          Length = 328

 Score = 30.8 bits (68), Expect = 7.6
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +3

Query: 3   VQMNISKQQI--LDEEFWFIQKFSRM--LELANFSELNGHDIKKWFHNQ 137
           ++ N S +Q+  L++EF F +  +R   +E+AN   LN   +K WF N+
Sbjct: 232 IRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNR 280

>sp|P66666|RNC_MYCTU Ribonuclease III (RNase III)
 sp|P66667|RNC_MYCBO Ribonuclease III (RNase III)
          Length = 240

 Score = 30.8 bits (68), Expect = 7.6
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = +3

Query: 369 DLSEGELIHTVPEVTIGQSVIDNSLLTWTALLCAVGWGSHLMLPAAVLDSGWLSSTHHLA 548
           D SEG+L      V   Q++ D +       LCA G G H++L     ++G    +  LA
Sbjct: 65  DRSEGDLAKLRASVVNTQALADVA-----RRLCAEGLGVHVLLGRGEANTGGADKSSILA 119

Query: 549 VSLGVLSGAVGLAH 590
             +  L GA+ L H
Sbjct: 120 DGMESLLGAIYLQH 133

>sp|Q08820|HXD1_XENLA Homeobox protein Hox-D1 (Hox.lab1)
          Length = 300

 Score = 30.8 bits (68), Expect = 7.6
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
 Frame = +3

Query: 3   VQMNISKQQI--LDEEFWFIQKFSRM--LELANFSELNGHDIKKWFHNQ 137
           V+ N + +Q+  L++EF F +  +R   +E+AN  +LN   +K WF N+
Sbjct: 203 VRTNFTTKQLTELEKEFHFNKYLTRARRIEIANSLQLNDTQVKIWFQNR 251

>sp|P55931|ETFD_PIG Electron transfer flavoprotein-ubiquinone oxidoreductase,
           mitochondrial precursor (ETF-QO) (ETF-ubiquinone
           oxidoreductase) (ETF dehydrogenase)
           (Electron-transferring-flavoprotein dehydrogenase)
          Length = 607

 Score = 30.8 bits (68), Expect = 7.6
 Identities = 20/80 (25%), Positives = 36/80 (45%)
 Frame = +3

Query: 480 GSHLMLPAAVLDSGWLSSTHHLAVSLGVLSGAVGLAHWTVIQNKKSNYWKWRSELNYRSI 659
           G+H  + +  L +    S  +   S  + S  +GL H T  ++   N W W+   + R+I
Sbjct: 389 GTHTAMKSGTLAA---ESIFNQLTSENLQSKTIGL-HVTEYEDNLKNSWVWKELYSVRNI 444

Query: 660 IANNRGVINVLGDRVQDEIF 719
             +  G++ V G  +   IF
Sbjct: 445 RPSCHGILGVYGGMIYTGIF 464

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,955,008
Number of Sequences: 369166
Number of extensions: 3325836
Number of successful extensions: 9785
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9757
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 12821793540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00921

Planaria EST Database

DrC_00921

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail