Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_D06
(871 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q16134|ETFD_HUMAN Electron transfer flavoprotein-ubiquin... 32 1.8
sp|Q01822|HXD1_MOUSE Homeobox protein Hox-D1 (Hox-4.9) 32 3.0
sp|Q8ZQD5|FTSK_SALTY DNA translocase ftsK 32 3.0
sp|Q8Z814|FTSK_SALTI DNA translocase ftsK 31 3.9
sp|O00258|WRB_HUMAN Tryptophan-rich protein (Congenital hea... 31 5.1
sp|Q9GZZ0|HXD1_HUMAN Homeobox protein Hox-D1 31 5.1
sp|P66666|RNC_MYCTU Ribonuclease III (RNase III) >gi|540392... 31 5.1
sp|Q08820|HXD1_XENLA Homeobox protein Hox-D1 (Hox.lab1) 31 5.1
sp|P55931|ETFD_PIG Electron transfer flavoprotein-ubiquinon... 31 5.1
sp|P24231|PMBA_ECOLI Protein pmbA (Protein tldE) 30 6.7
>sp|Q16134|ETFD_HUMAN Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial precursor (ETF-QO) (ETF-ubiquinone
oxidoreductase) (ETF dehydrogenase)
(Electron-transferring-flavoprotein dehydrogenase)
Length = 617
Score = 32.3 bits (72), Expect = 1.8
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = +3
Query: 480 GSHLMLPAAVLDSGWLSSTHHLAVSLGVLSGAVGLAHWTVIQNKKSNYWKWRSELNYRSI 659
G+H + + +L + S + S + S +GL H T ++ N W W+ + R+I
Sbjct: 399 GTHTAMKSGILAA---ESIFNQLTSENLQSKTIGL-HVTEYEDNLKNSWVWKELYSVRNI 454
Query: 660 IANNRGVINVLGDRVQDEIF 719
+ GV+ V G + IF
Sbjct: 455 RPSCHGVLGVYGGMIYTGIF 474
>sp|Q01822|HXD1_MOUSE Homeobox protein Hox-D1 (Hox-4.9)
Length = 327
Score = 31.6 bits (70), Expect = 3.0
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Frame = +3
Query: 3 VQMNISKQQI--LDEEFWFIQKFSRM--LELANFSELNGHDIKKWFHNQ 137
++ N S +Q+ L++EF F + +R +E+AN +LN +K WF N+
Sbjct: 231 IRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLQLNDTQVKIWFQNR 279
>sp|Q8ZQD5|FTSK_SALTY DNA translocase ftsK
Length = 1351
Score = 31.6 bits (70), Expect = 3.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -3
Query: 257 PHKPLKNPPILANSVPAEQPQLQNVVFPRIDPHLHRGESPLIMEP 123
PH+PL P ++ S P +QP V P+ P + + P+ +P
Sbjct: 709 PHEPLFTPGVMPESTPVQQP-----VAPQPQPQYQQPQQPVAPQP 748
>sp|Q8Z814|FTSK_SALTI DNA translocase ftsK
Length = 1343
Score = 31.2 bits (69), Expect = 3.9
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = -3
Query: 257 PHKPLKNPPILANSVP-----AEQPQLQNVVFPRIDPHLHRGESPLIMEP 123
PH+PL P ++ S P A QPQ Q V P+ P + + P+ +P
Sbjct: 706 PHEPLFTPGVMPESTPVQQPVAPQPQYQQPVAPQ--PQYQQPQQPVASQP 753
>sp|O00258|WRB_HUMAN Tryptophan-rich protein (Congenital heart disease 5 protein)
Length = 174
Score = 30.8 bits (68), Expect = 5.1
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +3
Query: 456 ALLCAVGWGSHLMLPAAVLDSGWLSSTHHLAVSLGVLSGAVGLAHWTVIQNK 611
AL+ ++ W + +P AV+ S W++ L ++G VG+ W ++ NK
Sbjct: 114 ALMISLIW-KYYSVPVAVVPSKWITPLDRLVAFPTRVAGGVGITCWILVCNK 164
>sp|Q9GZZ0|HXD1_HUMAN Homeobox protein Hox-D1
Length = 328
Score = 30.8 bits (68), Expect = 5.1
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = +3
Query: 3 VQMNISKQQI--LDEEFWFIQKFSRM--LELANFSELNGHDIKKWFHNQ 137
++ N S +Q+ L++EF F + +R +E+AN LN +K WF N+
Sbjct: 232 IRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNR 280
>sp|P66666|RNC_MYCTU Ribonuclease III (RNase III)
sp|P66667|RNC_MYCBO Ribonuclease III (RNase III)
Length = 240
Score = 30.8 bits (68), Expect = 5.1
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +3
Query: 369 DLSEGELIHTVPEVTIGQSVIDNSLLTWTALLCAVGWGSHLMLPAAVLDSGWLSSTHHLA 548
D SEG+L V Q++ D + LCA G G H++L ++G + LA
Sbjct: 65 DRSEGDLAKLRASVVNTQALADVA-----RRLCAEGLGVHVLLGRGEANTGGADKSSILA 119
Query: 549 VSLGVLSGAVGLAH 590
+ L GA+ L H
Sbjct: 120 DGMESLLGAIYLQH 133
>sp|Q08820|HXD1_XENLA Homeobox protein Hox-D1 (Hox.lab1)
Length = 300
Score = 30.8 bits (68), Expect = 5.1
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Frame = +3
Query: 3 VQMNISKQQI--LDEEFWFIQKFSRM--LELANFSELNGHDIKKWFHNQ 137
V+ N + +Q+ L++EF F + +R +E+AN +LN +K WF N+
Sbjct: 203 VRTNFTTKQLTELEKEFHFNKYLTRARRIEIANSLQLNDTQVKIWFQNR 251
>sp|P55931|ETFD_PIG Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial precursor (ETF-QO) (ETF-ubiquinone
oxidoreductase) (ETF dehydrogenase)
(Electron-transferring-flavoprotein dehydrogenase)
Length = 607
Score = 30.8 bits (68), Expect = 5.1
Identities = 20/80 (25%), Positives = 36/80 (45%)
Frame = +3
Query: 480 GSHLMLPAAVLDSGWLSSTHHLAVSLGVLSGAVGLAHWTVIQNKKSNYWKWRSELNYRSI 659
G+H + + L + S + S + S +GL H T ++ N W W+ + R+I
Sbjct: 389 GTHTAMKSGTLAA---ESIFNQLTSENLQSKTIGL-HVTEYEDNLKNSWVWKELYSVRNI 444
Query: 660 IANNRGVINVLGDRVQDEIF 719
+ G++ V G + IF
Sbjct: 445 RPSCHGILGVYGGMIYTGIF 464
>sp|P24231|PMBA_ECOLI Protein pmbA (Protein tldE)
Length = 450
Score = 30.4 bits (67), Expect = 6.7
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 28/88 (31%)
Frame = +2
Query: 134 SGGIH--RDAGVGRSWEIRRSE-------------AVAARQGRYSRGSGGF*AVCGEISA 268
+GGIH R AG G S+E E V+A G YSRG+ GF GEI
Sbjct: 345 AGGIHNWRIAGQGLSFEQMLKEMGTGLVVTELMGQGVSAITGDYSRGAAGFWVENGEIQY 404
Query: 269 D-------------WREPFSIGPAVQTR 313
WR ++G ++TR
Sbjct: 405 PVSEITIAGNLKDMWRNIVTVGNDIETR 432
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,469,752
Number of Sequences: 369166
Number of extensions: 2781364
Number of successful extensions: 8094
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8067
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8598109270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)