Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_N15
(902 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q16134|ETFD_HUMAN Electron transfer flavoprotein-ubiquin... 32 1.9
sp|O00258|WRB_HUMAN Tryptophan-rich protein (Congenital hea... 31 5.4
sp|P66666|RNC_MYCTU Ribonuclease III (RNase III) >gi|540392... 31 5.4
sp|P55931|ETFD_PIG Electron transfer flavoprotein-ubiquinon... 31 5.4
sp|Q8RAC2|ARGR_THETN Arginine repressor 30 7.1
sp|P58297|FLID_ECO57 Flagellar hook-associated protein 2 (H... 30 7.1
sp|Q8XWQ8|AMPA_RALSO Probable cytosol aminopeptidase (Leuci... 30 9.2
sp|P24216|FLID_ECOLI Flagellar hook-associated protein 2 (H... 30 9.2
>sp|Q16134|ETFD_HUMAN Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial precursor (ETF-QO) (ETF-ubiquinone
oxidoreductase) (ETF dehydrogenase)
(Electron-transferring-flavoprotein dehydrogenase)
Length = 617
Score = 32.3 bits (72), Expect = 1.9
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = +2
Query: 332 GSHLMLPAAVLDSGWLSSTHHLAVSLGVLSGAVGLAHWTVIQNKKSNYWKWRSELNYRSI 511
G+H + + +L + S + S + S +GL H T ++ N W W+ + R+I
Sbjct: 399 GTHTAMKSGILAA---ESIFNQLTSENLQSKTIGL-HVTEYEDNLKNSWVWKELYSVRNI 454
Query: 512 IANNRGVINVLGDRVQDEIF 571
+ GV+ V G + IF
Sbjct: 455 RPSCHGVLGVYGGMIYTGIF 474
>sp|O00258|WRB_HUMAN Tryptophan-rich protein (Congenital heart disease 5 protein)
Length = 174
Score = 30.8 bits (68), Expect = 5.4
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +2
Query: 308 ALLCAVGWGSHLMLPAAVLDSGWLSSTHHLAVSLGVLSGAVGLAHWTVIQNK 463
AL+ ++ W + +P AV+ S W++ L ++G VG+ W ++ NK
Sbjct: 114 ALMISLIW-KYYSVPVAVVPSKWITPLDRLVAFPTRVAGGVGITCWILVCNK 164
>sp|P66666|RNC_MYCTU Ribonuclease III (RNase III)
sp|P66667|RNC_MYCBO Ribonuclease III (RNase III)
Length = 240
Score = 30.8 bits (68), Expect = 5.4
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +2
Query: 221 DLSEGELIHTVPEVTIGQSVIDNSLLTWTALLCAVGWGSHLMLPAAVLDSGWLSSTHHLA 400
D SEG+L V Q++ D + LCA G G H++L ++G + LA
Sbjct: 65 DRSEGDLAKLRASVVNTQALADVA-----RRLCAEGLGVHVLLGRGEANTGGADKSSILA 119
Query: 401 VSLGVLSGAVGLAH 442
+ L GA+ L H
Sbjct: 120 DGMESLLGAIYLQH 133
>sp|P55931|ETFD_PIG Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial precursor (ETF-QO) (ETF-ubiquinone
oxidoreductase) (ETF dehydrogenase)
(Electron-transferring-flavoprotein dehydrogenase)
Length = 607
Score = 30.8 bits (68), Expect = 5.4
Identities = 20/80 (25%), Positives = 36/80 (45%)
Frame = +2
Query: 332 GSHLMLPAAVLDSGWLSSTHHLAVSLGVLSGAVGLAHWTVIQNKKSNYWKWRSELNYRSI 511
G+H + + L + S + S + S +GL H T ++ N W W+ + R+I
Sbjct: 389 GTHTAMKSGTLAA---ESIFNQLTSENLQSKTIGL-HVTEYEDNLKNSWVWKELYSVRNI 444
Query: 512 IANNRGVINVLGDRVQDEIF 571
+ G++ V G + IF
Sbjct: 445 RPSCHGILGVYGGMIYTGIF 464
>sp|Q8RAC2|ARGR_THETN Arginine repressor
Length = 151
Score = 30.4 bits (67), Expect = 7.1
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +2
Query: 674 DDNFKNAYSDM---QLNLSEALSMLRQLNIISLDQSSQLLTAKTLEQSAAALGIEFDASN 844
+D + Y+ M N+SE L L +I+++D + ++ KTL SA+A D N
Sbjct: 56 EDGKRYKYAPMTKVDTNISERLMTLLSESIVNVDYAGNIIVIKTLSGSASAAAEAIDTLN 115
>sp|P58297|FLID_ECO57 Flagellar hook-associated protein 2 (HAP2) (Filament cap protein)
(Flagellar cap protein)
Length = 465
Score = 30.4 bits (67), Expect = 7.1
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Frame = +2
Query: 497 NYR-SIIANNRGVINVLGDRVQDEIFKECLLAY---IHILGQPNGVKQEDLELLVRNWAI 664
+YR S+ +N+ G+ N + V + + + Y G V ++ +L V N AI
Sbjct: 172 DYRLSVTSNDTGLDNAMTLSVSGDDALQSFMGYDASASSNGMEVSVAAQNAQLTVNNVAI 231
Query: 665 ENCDDNFKNAYSDMQLNLSEALSMLRQLNI 754
EN + +A ++ LNL++ + + L I
Sbjct: 232 ENSSNTISDALENITLNLNDVTTGNQTLTI 261
>sp|Q8XWQ8|AMPA_RALSO Probable cytosol aminopeptidase (Leucine aminopeptidase) (LAP)
(Leucyl aminopeptidase)
Length = 506
Score = 30.0 bits (66), Expect = 9.2
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = +2
Query: 350 PAAVLDSGWLSSTHHLA---VSLGVLSGAVGLAHWTVIQNKKSNYWKWRSELN--YRSII 514
PAAV+D L+ +A ++ GV + + LA+ + K+S WR L+ Y+ ++
Sbjct: 379 PAAVIDVATLTGAVIIALGHINTGVYARSDALANALLAAGKQSLDTGWRMPLDEEYQELL 438
Query: 515 ANNRGVINVLGDRVQDEIFKECLLA 589
+N + +G R + C LA
Sbjct: 439 KSNFADMGNIGGRPAASVTAACFLA 463
>sp|P24216|FLID_ECOLI Flagellar hook-associated protein 2 (HAP2) (Filament cap protein)
(Flagellar cap protein)
Length = 468
Score = 30.0 bits (66), Expect = 9.2
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Frame = +2
Query: 506 SIIANNRGVINVLGDRVQDEIFKECLLAY---IHILGQPNGVKQEDLELLVRNWAIENCD 676
S+ +N+ G+ N + V + + + Y G V ++ +L V N AIEN
Sbjct: 179 SVTSNDTGLDNAMTLSVSGDDALQSFMGYDASASSNGMEVSVAAQNAQLTVNNVAIENSS 238
Query: 677 DNFKNAYSDMQLNLSEALSMLRQLNI 754
+ +A ++ LNL++ + + L I
Sbjct: 239 NTISDALENITLNLNDVTTGNQTLTI 264
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,757,424
Number of Sequences: 369166
Number of extensions: 2523838
Number of successful extensions: 7173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7164
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9126484700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)