Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_D12
(681 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P55404|TRBG_RHISN PROBABLE CONJUGAL TRANSFER PROTEIN TRB... 31 2.6
sp|Q8RAC2|ARGR_THETN Arginine repressor 30 4.5
sp|P58297|FLID_ECO57 Flagellar hook-associated protein 2 (H... 30 4.5
sp|P36495|YCX7_CHLRE 232.2 kDa protein (ORF1995) (ORF-S) (O... 30 4.5
sp|P24216|FLID_ECOLI Flagellar hook-associated protein 2 (H... 30 5.9
sp|P21421|RPOB_PLAFA DNA-directed RNA polymerase beta chain 30 7.6
sp|P20929|NEBU_HUMAN Nebulin 29 10.0
sp|Q8K8I7|HAM1_STRP3 HAM1 protein homolog 29 10.0
sp|Q8P2D2|HAM1_STRP8 HAM1 protein homolog 29 10.0
sp|Q8D3B5|SYFB_WIGBR Phenylalanyl-tRNA synthetase beta chai... 29 10.0
>sp|P55404|TRBG_RHISN PROBABLE CONJUGAL TRANSFER PROTEIN TRBG preCURSOR
Length = 270
Score = 31.2 bits (69), Expect = 2.6
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = -2
Query: 656 LKYHLSSLAVRRIFSYPSAIG*STARLTSSFLITGLPSRSTDKLEASNSIPNAA 495
LK H S R F YP + A + S G+P + DKL S S+ +A
Sbjct: 139 LKSHPSQYMARVGFEYPEDVSTKLADINSRLETGGIPGTAPDKLNFSYSVSGSA 192
>sp|Q8RAC2|ARGR_THETN Arginine repressor
Length = 151
Score = 30.4 bits (67), Expect = 4.5
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +1
Query: 358 DDNFKNAYSDM---QLNLSEALSMLRQLNIISLDQSSQLLTAKTLEQSAAALGIEFDASN 528
+D + Y+ M N+SE L L +I+++D + ++ KTL SA+A D N
Sbjct: 56 EDGKRYKYAPMTKVDTNISERLMTLLSESIVNVDYAGNIIVIKTLSGSASAAAEAIDTLN 115
>sp|P58297|FLID_ECO57 Flagellar hook-associated protein 2 (HAP2) (Filament cap protein)
(Flagellar cap protein)
Length = 465
Score = 30.4 bits (67), Expect = 4.5
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Frame = +1
Query: 181 NYR-SIIANNRGVINVLGDRVQDEIFKECLLAY---IHILGQPNGVKQEDLELLVRNWAI 348
+YR S+ +N+ G+ N + V + + + Y G V ++ +L V N AI
Sbjct: 172 DYRLSVTSNDTGLDNAMTLSVSGDDALQSFMGYDASASSNGMEVSVAAQNAQLTVNNVAI 231
Query: 349 ENCDDNFKNAYSDMQLNLSEALSMLRQLNI 438
EN + +A ++ LNL++ + + L I
Sbjct: 232 ENSSNTISDALENITLNLNDVTTGNQTLTI 261
>sp|P36495|YCX7_CHLRE 232.2 kDa protein (ORF1995) (ORF-S) (ORFA)
Length = 1995
Score = 30.4 bits (67), Expect = 4.5
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 33 HLAVSLGVLSGAVGLAHWTVWLVETLVKLLYIFSDTKQEIKL 158
H A LG+L G+ L +T W E +Y++ TK +K+
Sbjct: 258 HGAYLLGILFGSFSLLQFTCWFWENPAFSIYLWITTKSSLKI 299
>sp|P24216|FLID_ECOLI Flagellar hook-associated protein 2 (HAP2) (Filament cap protein)
(Flagellar cap protein)
Length = 468
Score = 30.0 bits (66), Expect = 5.9
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Frame = +1
Query: 190 SIIANNRGVINVLGDRVQDEIFKECLLAY---IHILGQPNGVKQEDLELLVRNWAIENCD 360
S+ +N+ G+ N + V + + + Y G V ++ +L V N AIEN
Sbjct: 179 SVTSNDTGLDNAMTLSVSGDDALQSFMGYDASASSNGMEVSVAAQNAQLTVNNVAIENSS 238
Query: 361 DNFKNAYSDMQLNLSEALSMLRQLNI 438
+ +A ++ LNL++ + + L I
Sbjct: 239 NTISDALENITLNLNDVTTGNQTLTI 264
>sp|P21421|RPOB_PLAFA DNA-directed RNA polymerase beta chain
Length = 1024
Score = 29.6 bits (65), Expect = 7.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 339 VSHKQFQIFLFNSIWLAKNVNISKQTLL 256
+ +K F FN+I+L KN+N +K T+L
Sbjct: 419 IFNKNFYNISFNNIYLKKNINFNKTTIL 446
>sp|P20929|NEBU_HUMAN Nebulin
Length = 6669
Score = 29.3 bits (64), Expect = 10.0
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = +1
Query: 154 NYWKWRSELNYRSIIANNRGVINVLGDRVQDEIFKECL-----LAYIHILGQPNGVKQED 318
++ K RS LNYR + + +++ D + + K C L Y H Q + +E
Sbjct: 4523 DFQKMRSALNYRKHYEDTKANVHIPNDMMNHVLAKRCQYILSDLEYRHYFHQWTSLLEEP 4582
Query: 319 LELLVRNWAIENCDDN 366
+ VRN A E DN
Sbjct: 4583 NVIRVRN-AQEILSDN 4597
>sp|Q8K8I7|HAM1_STRP3 HAM1 protein homolog
Length = 328
Score = 29.3 bits (64), Expect = 10.0
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = -1
Query: 297 WLAKNVNISKQTLLEYLILDPIP*YIDHPSVVGYDRSIIQFRAPLPVI*FLV 142
W K+ I K L LD I +D + GYD S++++++PL +I F++
Sbjct: 28 WGVKHTTIKKIDDL----LDGIAATLDWENPKGYDVSVVRYQSPLSLITFII 75
>sp|Q8P2D2|HAM1_STRP8 HAM1 protein homolog
Length = 328
Score = 29.3 bits (64), Expect = 10.0
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = -1
Query: 297 WLAKNVNISKQTLLEYLILDPIP*YIDHPSVVGYDRSIIQFRAPLPVI*FLV 142
W K+ I K L LD I +D + GYD S++++++PL +I F++
Sbjct: 28 WGVKHTTIKKIDDL----LDGIAATLDWENPKGYDVSVVRYQSPLSLITFII 75
>sp|Q8D3B5|SYFB_WIGBR Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
beta chain) (PheRS)
Length = 803
Score = 29.3 bits (64), Expect = 10.0
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 274 YIHILGQPNGVKQEDLELLVRNWAIENCDDNFKNAYSDMQLNLSEALSMLRQLNII 441
Y+ I+G+ N Q L++ R + E DN KN Y N+S+ R ++I+
Sbjct: 664 YVGIIGEINPNIQNKLDIKNRIFVFELLWDNIKNFYVPKIYNISDIPFNYRDISIV 719
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,826,549
Number of Sequences: 369166
Number of extensions: 1488874
Number of successful extensions: 4048
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4047
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5782011865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)