Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_O02
(519 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q16134|ETFD_HUMAN Electron transfer flavoprotein-ubiquin... 32 0.69
sp|P65371|MML7_MYCBO Putative membrane protein mmpL7 >gi|54... 32 0.91
sp|O00258|WRB_HUMAN Tryptophan-rich protein (Congenital hea... 31 2.0
sp|P66666|RNC_MYCTU Ribonuclease III (RNase III) >gi|540392... 31 2.0
sp|P55931|ETFD_PIG Electron transfer flavoprotein-ubiquinon... 31 2.0
sp|Q8XWQ8|AMPA_RALSO Probable cytosol aminopeptidase (Leuci... 30 3.4
sp|P22795|Y3021_SULSO Hypothetical protein SSO3021 30 3.4
sp|Q96NY7|CLIC6_HUMAN Chloride intracellular channel 6 30 3.4
sp|P21421|RPOB_PLAFA DNA-directed RNA polymerase beta chain 30 4.5
sp|P20929|NEBU_HUMAN Nebulin 29 5.9
>sp|Q16134|ETFD_HUMAN Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial precursor (ETF-QO) (ETF-ubiquinone
oxidoreductase) (ETF dehydrogenase)
(Electron-transferring-flavoprotein dehydrogenase)
Length = 617
Score = 32.3 bits (72), Expect = 0.69
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = +1
Query: 157 GSHLMLPAAVLDSGWLSSTHHLAVSLGVLSGAVGLAHWTVIQNKKSNYWKWRSELNYRSI 336
G+H + + +L + S + S + S +GL H T ++ N W W+ + R+I
Sbjct: 399 GTHTAMKSGILAA---ESIFNQLTSENLQSKTIGL-HVTEYEDNLKNSWVWKELYSVRNI 454
Query: 337 IANNRGVINVLGDRVQDEIF 396
+ GV+ V G + IF
Sbjct: 455 RPSCHGVLGVYGGMIYTGIF 474
>sp|P65371|MML7_MYCBO Putative membrane protein mmpL7
sp|P65370|MML7_MYCTU Putative membrane protein mmpL7
Length = 920
Score = 32.0 bits (71), Expect = 0.91
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Frame = +1
Query: 1 ARAKRASKVHLKMFKDLSEGELIHTVPEVTIGQSV----IDNSLLTWTALLCAVGWGSHL 168
A A RA ++ + K + G L+ + +VT+G + L A+L AV +
Sbjct: 719 AAAARAQQLEIAAGKAMKYGSLVDS--QVTVGGAAQIAAAVRDALIHDAVLLAV-----I 771
Query: 169 MLPAAVLDSGWLSSTHHLAVSLGVLSG-----AVGLAHWTVIQNKKSN 297
+L L S W + H AV +GVL+ V +A W + +++ N
Sbjct: 772 LLTVVALASMWRGAVHGAAVGVGVLASYLAALGVSIALWQHLLDRELN 819
>sp|O00258|WRB_HUMAN Tryptophan-rich protein (Congenital heart disease 5 protein)
Length = 174
Score = 30.8 bits (68), Expect = 2.0
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 133 ALLCAVGWGSHLMLPAAVLDSGWLSSTHHLAVSLGVLSGAVGLAHWTVIQNK 288
AL+ ++ W + +P AV+ S W++ L ++G VG+ W ++ NK
Sbjct: 114 ALMISLIW-KYYSVPVAVVPSKWITPLDRLVAFPTRVAGGVGITCWILVCNK 164
>sp|P66666|RNC_MYCTU Ribonuclease III (RNase III)
sp|P66667|RNC_MYCBO Ribonuclease III (RNase III)
Length = 240
Score = 30.8 bits (68), Expect = 2.0
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +1
Query: 46 DLSEGELIHTVPEVTIGQSVIDNSLLTWTALLCAVGWGSHLMLPAAVLDSGWLSSTHHLA 225
D SEG+L V Q++ D + LCA G G H++L ++G + LA
Sbjct: 65 DRSEGDLAKLRASVVNTQALADVA-----RRLCAEGLGVHVLLGRGEANTGGADKSSILA 119
Query: 226 VSLGVLSGAVGLAH 267
+ L GA+ L H
Sbjct: 120 DGMESLLGAIYLQH 133
>sp|P55931|ETFD_PIG Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial precursor (ETF-QO) (ETF-ubiquinone
oxidoreductase) (ETF dehydrogenase)
(Electron-transferring-flavoprotein dehydrogenase)
Length = 607
Score = 30.8 bits (68), Expect = 2.0
Identities = 20/80 (25%), Positives = 36/80 (45%)
Frame = +1
Query: 157 GSHLMLPAAVLDSGWLSSTHHLAVSLGVLSGAVGLAHWTVIQNKKSNYWKWRSELNYRSI 336
G+H + + L + S + S + S +GL H T ++ N W W+ + R+I
Sbjct: 389 GTHTAMKSGTLAA---ESIFNQLTSENLQSKTIGL-HVTEYEDNLKNSWVWKELYSVRNI 444
Query: 337 IANNRGVINVLGDRVQDEIF 396
+ G++ V G + IF
Sbjct: 445 RPSCHGILGVYGGMIYTGIF 464
>sp|Q8XWQ8|AMPA_RALSO Probable cytosol aminopeptidase (Leucine aminopeptidase) (LAP)
(Leucyl aminopeptidase)
Length = 506
Score = 30.0 bits (66), Expect = 3.4
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = +1
Query: 175 PAAVLDSGWLSSTHHLA---VSLGVLSGAVGLAHWTVIQNKKSNYWKWRSELN--YRSII 339
PAAV+D L+ +A ++ GV + + LA+ + K+S WR L+ Y+ ++
Sbjct: 379 PAAVIDVATLTGAVIIALGHINTGVYARSDALANALLAAGKQSLDTGWRMPLDEEYQELL 438
Query: 340 ANNRGVINVLGDRVQDEIFKECLLA 414
+N + +G R + C LA
Sbjct: 439 KSNFADMGNIGGRPAASVTAACFLA 463
>sp|P22795|Y3021_SULSO Hypothetical protein SSO3021
Length = 592
Score = 30.0 bits (66), Expect = 3.4
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = -1
Query: 510 EIIITIFYSPVSHKQFQIFLFNSIWLAKNVNISKQTLLEYLILDPI 373
EIII F++ H + + LFNS++ VN +K TLL+ ++ DP+
Sbjct: 115 EIIIDDFWANWCHSEKDVKLFNSMY---GVNFTKGTLLK-MLRDPV 156
>sp|Q96NY7|CLIC6_HUMAN Chloride intracellular channel 6
Length = 704
Score = 30.0 bits (66), Expect = 3.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 12 AGQQGASQDVQGPLGGRIDPHGAGGD 89
+G+ G S D +GPLG I+ G GD
Sbjct: 153 SGEAGDSVDAEGPLGDNIEAEGPAGD 178
>sp|P21421|RPOB_PLAFA DNA-directed RNA polymerase beta chain
Length = 1024
Score = 29.6 bits (65), Expect = 4.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 480 VSHKQFQIFLFNSIWLAKNVNISKQTLL 397
+ +K F FN+I+L KN+N +K T+L
Sbjct: 419 IFNKNFYNISFNNIYLKKNINFNKTTIL 446
>sp|P20929|NEBU_HUMAN Nebulin
Length = 6669
Score = 29.3 bits (64), Expect = 5.9
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = +1
Query: 295 NYWKWRSELNYRSIIANNRGVINVLGDRVQDEIFKECL-----LAYIHILGQPNGVKQED 459
++ K RS LNYR + + +++ D + + K C L Y H Q + +E
Sbjct: 4523 DFQKMRSALNYRKHYEDTKANVHIPNDMMNHVLAKRCQYILSDLEYRHYFHQWTSLLEEP 4582
Query: 460 LELLVRNWAIENCDDN 507
+ VRN A E DN
Sbjct: 4583 NVIRVRN-AQEILSDN 4597
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,908,892
Number of Sequences: 369166
Number of extensions: 1547171
Number of successful extensions: 4360
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4360
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3403581975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)