Planarian EST Database

DrC_00919

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00919 GGGTCGACGCAGTTCAGGCCGGAAGAGTTCACCCATGAGAAGTAAATTGCCAGCTCGTCC ACCTCCATCAAGTCCTACTACATATCAGCAACCTAAACAACCTGGAATGTTTGCTCAGAT GGCAACAACTGCGGCCGGGGTTGCTGTTGGTTCAGCTATTGGTCACACAGTTGGAGCTGC TTTAACTGGAGGTATGTCTGATGGGAGTAATTCTGATGTTCAACAAGTGGAACAAGTTCA ACAACAGCCAAGTTATGGTTACAGTTCTCTTAATCAACCAAATCCTTGTCAAAATAATAT AAATGAATTACTTCGATGTACTCAAAACGAAAGTGATATTAGTTTATGTATGGGCTTCAG TGAAGCTCTTAAAGATTGTAAACGATTTTACGGATTATCTTAAAATTAACTGATTAGATT TTTAGGATAGATATGTCGGTGCTCTAATTTCTTTGAGTGTGATAGTTTGTTATGGATTTA GTAAAAAAAATACTACTTAGTTTATT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00919
         (506 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y6H1|CHCH2_HUMAN  Coiled-coil-helix-coiled-coil-helix d...    78   1e-14
sp|Q9D1L0|CHCH2_MOUSE  Coiled-coil-helix-coiled-coil-helix d...    71   1e-12
sp|Q09254|YQ5B_CAEEL  Hypothetical protein C16C10.11 in chro...    59   9e-09
sp|Q03667|YMO2_YEAST  Hypothetical 16.7 kDa protein in CDC5-...    42   6e-04
sp|Q10307|YD52_SCHPO  Hypothetical protein C6C3.02c in chrom...    40   0.004

>sp|Q9Y6H1|CHCH2_HUMAN Coiled-coil-helix-coiled-coil-helix domain containing protein 2
           (HCV NS2 trans-regulated protein) (NS2TP)
          Length = 151

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 40/99 (40%), Positives = 51/99 (51%)
 Frame = +2

Query: 104 GMFAQMXXXXXXXXXXSAIGHTVGAALTGGMSDGSNSDXXXXXXXXXXPSYGYSSLNQPN 283
           G+ AQM          SA+GHT+G A+TGG S GSN++          P  G     Q  
Sbjct: 54  GLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQ-GTQPAQQQQ 112

Query: 284 PCQNNINELLRCTQNESDISLCMGFSEALKDCKRFYGLS 400
           PC   I + L C QN+ DI LC GF+E LK C+   GL+
Sbjct: 113 PCLYEIKQFLECAQNQGDIKLCEGFNEVLKQCRLANGLA 151

>sp|Q9D1L0|CHCH2_MOUSE Coiled-coil-helix-coiled-coil-helix domain containing protein 2
          Length = 153

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
 Frame = +2

Query: 104 GMFAQMXXXXXXXXXXSAIGHTVGAALTGGMSDGSNSDXXXXXXXXXXPSYGYSSLNQPN 283
           G+ AQM          SA+GHT+G A+TGG S G +++          P  G    NQ +
Sbjct: 54  GLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGGSAEPAKPDITYQEPQ-GAQLQNQQS 112

Query: 284 --PCQNNINELLRCTQNESDISLCMGFSEALKDCKRFYGL 397
             PC   I + L C QN+SD+ LC GF+E L+ C+   GL
Sbjct: 113 FGPCSLEIKQFLECAQNQSDVKLCEGFNEVLRQCRIANGL 152

>sp|Q09254|YQ5B_CAEEL Hypothetical protein C16C10.11 in chromosome III
          Length = 154

 Score = 58.5 bits (140), Expect = 9e-09
 Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
 Frame = +2

Query: 104 GMFAQMXXXXXXXXXXSAIGHTVGAALTGGMSDGSNSDXXXXXXXXXXP-SYGYSSLNQP 280
           G+  QM          SA+GH VG   TGG S  +             P + GYS     
Sbjct: 62  GLMKQMAATAGGVAIGSAVGHAVGGMFTGGGSSHAEQAPAAAAAPAGAPQASGYSQ---- 117

Query: 281 NPCQNNINELLRCTQNESDISLCMGFSEALKDCKRFY 391
            PC+    + + C QN+SD+SLC GF++  K CK  Y
Sbjct: 118 -PCEFEWRQFVDCAQNQSDVSLCNGFNDIFKQCKARY 153

>sp|Q03667|YMO2_YEAST Hypothetical 16.7 kDa protein in CDC5-MVP1 intergenic region
          Length = 156

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
 Frame = +2

Query: 104 GMFAQMXXXXXXXXXXSAIGHTVGAALTGGMS-DGSNSDXXXXXXXXXXPSYGYSSLNQP 280
           GMFAQM          S IGHT+GA +TG  S  GS+S            + G +  +Q 
Sbjct: 54  GMFAQMASTAAGVAVGSTIGHTLGAGITGMFSGSGSDSAPVEQQQQNMANTSGQTQTDQQ 113

Query: 281 --NPCQNNINELLRC-TQNESDISLCMGFSEALKDCK 382
               C+ +     RC  +N  +  +C  + + LK C+
Sbjct: 114 LGRTCEIDARNFTRCLDENNGNFQICDYYLQQLKACQ 150

>sp|Q10307|YD52_SCHPO Hypothetical protein C6C3.02c in chromosome I
          Length = 172

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 32/115 (27%), Positives = 42/115 (36%), Gaps = 19/115 (16%)
 Frame = +2

Query: 104 GMFAQMXXXXXXXXXXSAIGHTVGAALTGGMSDGSNSDXXXXXXXXXXPSYGYS------ 265
           G F  +          SAIGHTVG+ +TGG S GS S+           SY  S      
Sbjct: 56  GFFGNLVSTAAGVGIGSAIGHTVGSVITGGFS-GSGSNNAPADTSVPQSSYSNSVPEAAY 114

Query: 266 -------------SLNQPNPCQNNINELLRCTQNESDISLCMGFSEALKDCKRFY 391
                        S    N C+ +      C  NE + S C  + E LK C+  +
Sbjct: 115 GSAPPSTFASSAISEEAKNACKGDAKMFADCI-NEHEFSQCSYYLEQLKACQAMW 168

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,296,305
Number of Sequences: 369166
Number of extensions: 745684
Number of successful extensions: 1814
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1811
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3206272875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00919

Planaria EST Database

DrC_00919

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail