Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_B15
(472 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y6H1|CHCH2_HUMAN Coiled-coil-helix-coiled-coil-helix d... 77 2e-14
sp|Q9D1L0|CHCH2_MOUSE Coiled-coil-helix-coiled-coil-helix d... 71 1e-12
sp|Q09254|YQ5B_CAEEL Hypothetical protein C16C10.11 in chro... 57 2e-08
sp|Q03667|YMO2_YEAST Hypothetical 16.7 kDa protein in CDC5-... 41 0.001
sp|Q10307|YD52_SCHPO Hypothetical protein C6C3.02c in chrom... 39 0.008
sp|Q9HM69|CSG_HALSA Cell surface glycoprotein precursor (S-... 28 8.1
>sp|Q9Y6H1|CHCH2_HUMAN Coiled-coil-helix-coiled-coil-helix domain containing protein 2
(HCV NS2 trans-regulated protein) (NS2TP)
Length = 151
Score = 77.0 bits (188), Expect = 2e-14
Identities = 39/99 (39%), Positives = 51/99 (51%)
Frame = +1
Query: 76 GMFAQMXXXXXXXXXXSAIGHTVGAALTGGMSDGNNSDXXXXXXXXXXPSYGYSSLNQPN 255
G+ AQM SA+GHT+G A+TGG S G+N++ P G Q
Sbjct: 54 GLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQ-GTQPAQQQQ 112
Query: 256 PCQNNINELLRCTQNESDISLCMGFSEALKDCKRFYGLS 372
PC I + L C QN+ DI LC GF+E LK C+ GL+
Sbjct: 113 PCLYEIKQFLECAQNQGDIKLCEGFNEVLKQCRLANGLA 151
>sp|Q9D1L0|CHCH2_MOUSE Coiled-coil-helix-coiled-coil-helix domain containing protein 2
Length = 153
Score = 71.2 bits (173), Expect = 1e-12
Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Frame = +1
Query: 76 GMFAQMXXXXXXXXXXSAIGHTVGAALTGGMSDGNNSDXXXXXXXXXXPSYGYSSLNQPN 255
G+ AQM SA+GHT+G A+TGG S G +++ P G NQ +
Sbjct: 54 GLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGGSAEPAKPDITYQEPQ-GAQLQNQQS 112
Query: 256 --PCQNNINELLRCTQNESDISLCMGFSEALKDCKRFYGL 369
PC I + L C QN+SD+ LC GF+E L+ C+ GL
Sbjct: 113 FGPCSLEIKQFLECAQNQSDVKLCEGFNEVLRQCRIANGL 152
>sp|Q09254|YQ5B_CAEEL Hypothetical protein C16C10.11 in chromosome III
Length = 154
Score = 57.4 bits (137), Expect = 2e-08
Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Frame = +1
Query: 76 GMFAQMXXXXXXXXXXSAIGHTVGAALTGGMSDGNNSDXXXXXXXXXXP-SYGYSSLNQP 252
G+ QM SA+GH VG TGG S P + GYS
Sbjct: 62 GLMKQMAATAGGVAIGSAVGHAVGGMFTGGGSSHAEQAPAAAAAPAGAPQASGYSQ---- 117
Query: 253 NPCQNNINELLRCTQNESDISLCMGFSEALKDCKRFY 363
PC+ + + C QN+SD+SLC GF++ K CK Y
Sbjct: 118 -PCEFEWRQFVDCAQNQSDVSLCNGFNDIFKQCKARY 153
>sp|Q03667|YMO2_YEAST Hypothetical 16.7 kDa protein in CDC5-MVP1 intergenic region
Length = 156
Score = 41.2 bits (95), Expect = 0.001
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Frame = +1
Query: 76 GMFAQMXXXXXXXXXXSAIGHTVGAALTGGMS-DGNNSDXXXXXXXXXXPSYGYSSLNQP 252
GMFAQM S IGHT+GA +TG S G++S + G + +Q
Sbjct: 54 GMFAQMASTAAGVAVGSTIGHTLGAGITGMFSGSGSDSAPVEQQQQNMANTSGQTQTDQQ 113
Query: 253 --NPCQNNINELLRC-TQNESDISLCMGFSEALKDCK 354
C+ + RC +N + +C + + LK C+
Sbjct: 114 LGRTCEIDARNFTRCLDENNGNFQICDYYLQQLKACQ 150
>sp|Q10307|YD52_SCHPO Hypothetical protein C6C3.02c in chromosome I
Length = 172
Score = 38.5 bits (88), Expect = 0.008
Identities = 31/115 (26%), Positives = 42/115 (36%), Gaps = 19/115 (16%)
Frame = +1
Query: 76 GMFAQMXXXXXXXXXXSAIGHTVGAALTGGMSDGNNSDXXXXXXXXXXPSYGYS------ 237
G F + SAIGHTVG+ +TGG S G+ S+ SY S
Sbjct: 56 GFFGNLVSTAAGVGIGSAIGHTVGSVITGGFS-GSGSNNAPADTSVPQSSYSNSVPEAAY 114
Query: 238 -------------SLNQPNPCQNNINELLRCTQNESDISLCMGFSEALKDCKRFY 363
S N C+ + C NE + S C + E LK C+ +
Sbjct: 115 GSAPPSTFASSAISEEAKNACKGDAKMFADCI-NEHEFSQCSYYLEQLKACQAMW 168
>sp|Q9HM69|CSG_HALSA Cell surface glycoprotein precursor (S-layer protein)
Length = 852
Score = 28.5 bits (62), Expect = 8.1
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +1
Query: 130 IGHTVGA--ALTGGMSDGNNSDXXXXXXXXXXPSYGYSSLNQPNPCQNNINELLRCTQNE 303
+G +GA A TGG + N SD +Y YS+ ++ + ++ Q E
Sbjct: 18 VGSVIGAGVAFTGGAAAANASDLNDYQRFNENTNYTYSTASEDGKTEGSVASGATIFQGE 77
Query: 304 SDIS 315
D++
Sbjct: 78 EDVT 81
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,245,055
Number of Sequences: 369166
Number of extensions: 671517
Number of successful extensions: 1608
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1605
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2733320975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)