Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_F23
(450 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y6H1|CHCH2_HUMAN Coiled-coil-helix-coiled-coil-helix d... 84 1e-16
sp|Q9D1L0|CHCH2_MOUSE Coiled-coil-helix-coiled-coil-helix d... 75 5e-14
sp|Q09254|YQ5B_CAEEL Hypothetical protein C16C10.11 in chro... 61 1e-09
sp|Q03667|YMO2_YEAST Hypothetical 16.7 kDa protein in CDC5-... 47 2e-05
sp|Q10307|YD52_SCHPO Hypothetical protein C6C3.02c in chrom... 46 3e-05
sp|Q8R526|PK1L1_MOUSE Polycystic kidney disease 1-like 1 pr... 28 7.2
sp|Q10008|YSV2_CAEEL Hypothetical protein T19C3.2 in chromo... 28 9.4
sp|Q895L7|YC56_CLOTE Hypothetical UPF0102 protein CTC01256 28 9.4
>sp|Q9Y6H1|CHCH2_HUMAN Coiled-coil-helix-coiled-coil-helix domain containing protein 2
(HCV NS2 trans-regulated protein) (NS2TP)
Length = 151
Score = 84.0 bits (206), Expect = 1e-16
Identities = 47/115 (40%), Positives = 60/115 (52%), Gaps = 1/115 (0%)
Frame = +3
Query: 3 APPSSP-TTYQQPKQPGRFAQMXXXXXXXXXXSAIGHTGGAALTGGMSEGSNSDXXXXXX 179
APPS+ ++ P+QPG AQM SA+GHT G A+TGG S GSN++
Sbjct: 38 APPSAVGSSAAAPRQPGLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDI 97
Query: 180 XXXXPSYGYSSLNQPNPCQNNINKLLRCTQNESDISLCMGFCEALKECKRFYGLS 344
P G Q PC I + L C QN+ DI LC GF E LK+C+ GL+
Sbjct: 98 TYQEPQ-GTQPAQQQQPCLYEIKQFLECAQNQGDIKLCEGFNEVLKQCRLANGLA 151
>sp|Q9D1L0|CHCH2_MOUSE Coiled-coil-helix-coiled-coil-helix domain containing protein 2
Length = 153
Score = 75.5 bits (184), Expect = 5e-14
Identities = 43/115 (37%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Frame = +3
Query: 3 APPSSPTTYQQPKQPGRFAQMXXXXXXXXXXSAIGHTGGAALTGGMSEGSNSDXXXXXXX 182
AP + + P+QPG AQM SA+GHT G A+TGG S G +++
Sbjct: 39 APSAVGSPAAAPRQPGLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGGSAEPAKPDIT 98
Query: 183 XXXPSYGYSSLNQPN--PCQNNINKLLRCTQNESDISLCMGFCEALKECKRFYGL 341
P G NQ + PC I + L C QN+SD+ LC GF E L++C+ GL
Sbjct: 99 YQEPQ-GAQLQNQQSFGPCSLEIKQFLECAQNQSDVKLCEGFNEVLRQCRIANGL 152
>sp|Q09254|YQ5B_CAEEL Hypothetical protein C16C10.11 in chromosome III
Length = 154
Score = 60.8 bits (146), Expect = 1e-09
Identities = 38/116 (32%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Frame = +3
Query: 6 PPSSPTTYQQP-----KQPGRFAQMXXXXXXXXXXSAIGHTGGAALTGGMSEGSNSDXXX 170
PP++PT P + PG QM SA+GH G TGG S +
Sbjct: 43 PPAAPTPMGAPMGAPSQGPGLMKQMAATAGGVAIGSAVGHAVGGMFTGGGSSHAEQAPAA 102
Query: 171 XXXXXXXP-SYGYSSLNQPNPCQNNINKLLRCTQNESDISLCMGFCEALKECKRFY 335
P + GYS PC+ + + C QN+SD+SLC GF + K+CK Y
Sbjct: 103 AAAPAGAPQASGYSQ-----PCEFEWRQFVDCAQNQSDVSLCNGFNDIFKQCKARY 153
>sp|Q03667|YMO2_YEAST Hypothetical 16.7 kDa protein in CDC5-MVP1 intergenic region
Length = 156
Score = 47.0 bits (110), Expect = 2e-05
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Frame = +3
Query: 18 PTTYQQPKQPGRFAQMXXXXXXXXXXSAIGHTGGAALTGGMS-EGSNSDXXXXXXXXXXP 194
P Q +QPG FAQM S IGHT GA +TG S GS+S
Sbjct: 44 PAAGAQTRQPGMFAQMASTAAGVAVGSTIGHTLGAGITGMFSGSGSDSAPVEQQQQNMAN 103
Query: 195 SYGYSSLNQP--NPCQNNINKLLRC-TQNESDISLCMGFCEALKECK 326
+ G + +Q C+ + RC +N + +C + + LK C+
Sbjct: 104 TSGQTQTDQQLGRTCEIDARNFTRCLDENNGNFQICDYYLQQLKACQ 150
>sp|Q10307|YD52_SCHPO Hypothetical protein C6C3.02c in chromosome I
Length = 172
Score = 46.2 bits (108), Expect = 3e-05
Identities = 38/130 (29%), Positives = 48/130 (36%), Gaps = 19/130 (14%)
Frame = +3
Query: 3 APPSSPTTYQQPKQPGRFAQMXXXXXXXXXXSAIGHTGGAALTGGMSEGSNSDXXXXXXX 182
APP PT Q PG F + SAIGHT G+ +TGG S GS S+
Sbjct: 43 APP--PTAVQGGSSPGFFGNLVSTAAGVGIGSAIGHTVGSVITGGFS-GSGSNNAPADTS 99
Query: 183 XXXPSYGYS-------------------SLNQPNPCQNNINKLLRCTQNESDISLCMGFC 305
SY S S N C+ + C NE + S C +
Sbjct: 100 VPQSSYSNSVPEAAYGSAPPSTFASSAISEEAKNACKGDAKMFADCI-NEHEFSQCSYYL 158
Query: 306 EALKECKRFY 335
E LK C+ +
Sbjct: 159 EQLKACQAMW 168
>sp|Q8R526|PK1L1_MOUSE Polycystic kidney disease 1-like 1 protein (Polycystin-1L1)
Length = 531
Score = 28.5 bits (62), Expect = 7.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 74 CGRGCGWVGYWAHRWSCFNWRYV 142
CG G G++GYW C W Y+
Sbjct: 421 CGLGTGFLGYWFVPAQCMWWLYL 443
>sp|Q10008|YSV2_CAEEL Hypothetical protein T19C3.2 in chromosome III
Length = 269
Score = 28.1 bits (61), Expect = 9.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 113 CVPNSRPNRNPARSCCHLSKPS 48
CVP RP+ + R CCH P+
Sbjct: 182 CVPEHRPSGSVCRCCCHPYTPN 203
>sp|Q895L7|YC56_CLOTE Hypothetical UPF0102 protein CTC01256
Length = 122
Score = 28.1 bits (61), Expect = 9.4
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -1
Query: 357 SVTFKIIRKIVYTL*VLHRSPYIN*YHFRFEYIEVIYLYYSDKDSV 220
SV F KI T + +N ++FRF+ IE+I+ Y+D S+
Sbjct: 68 SVNFAKQYKIYKTAQLYILKKKLNRFYFRFDVIEIIFNNYNDDYSI 113
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,564,325
Number of Sequences: 369166
Number of extensions: 779902
Number of successful extensions: 2037
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2034
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2444192520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)