Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_E21
(420 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y6H1|CHCH2_HUMAN Coiled-coil-helix-coiled-coil-helix d... 86 2e-17
sp|Q9D1L0|CHCH2_MOUSE Coiled-coil-helix-coiled-coil-helix d... 79 3e-15
sp|Q09254|YQ5B_CAEEL Hypothetical protein C16C10.11 in chro... 61 8e-10
sp|Q03667|YMO2_YEAST Hypothetical 16.7 kDa protein in CDC5-... 49 3e-06
sp|Q10307|YD52_SCHPO Hypothetical protein C6C3.02c in chrom... 42 4e-04
>sp|Q9Y6H1|CHCH2_HUMAN Coiled-coil-helix-coiled-coil-helix domain containing protein 2
(HCV NS2 trans-regulated protein) (NS2TP)
Length = 151
Score = 86.3 bits (212), Expect = 2e-17
Identities = 43/103 (41%), Positives = 55/103 (53%)
Frame = +3
Query: 6 PKQPGMFAQMXXXXXXXXXXSAIGHTVGAALTGGMSDGSNSDXXXXXXXXXXPSYGYSSL 185
P+QPG+ AQM SA+GHT+G A+TGG S GSN++ P G
Sbjct: 50 PRQPGLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQ-GTQPA 108
Query: 186 NQPNPCQNNINELLRCTQNESDISLCMGFSEALKDCKRFYGLS 314
Q PC I + L C QN+ DI LC GF+E LK C+ GL+
Sbjct: 109 QQQQPCLYEIKQFLECAQNQGDIKLCEGFNEVLKQCRLANGLA 151
>sp|Q9D1L0|CHCH2_MOUSE Coiled-coil-helix-coiled-coil-helix domain containing protein 2
Length = 153
Score = 79.3 bits (194), Expect = 3e-15
Identities = 41/104 (39%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Frame = +3
Query: 6 PKQPGMFAQMXXXXXXXXXXSAIGHTVGAALTGGMSDGSNSDXXXXXXXXXXPSYGYSSL 185
P+QPG+ AQM SA+GHT+G A+TGG S G +++ P G
Sbjct: 50 PRQPGLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGGSAEPAKPDITYQEPQ-GAQLQ 108
Query: 186 NQPN--PCQNNINELLRCTQNESDISLCMGFSEALKDCKRFYGL 311
NQ + PC I + L C QN+SD+ LC GF+E L+ C+ GL
Sbjct: 109 NQQSFGPCSLEIKQFLECAQNQSDVKLCEGFNEVLRQCRIANGL 152
>sp|Q09254|YQ5B_CAEEL Hypothetical protein C16C10.11 in chromosome III
Length = 154
Score = 61.2 bits (147), Expect = 8e-10
Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = +3
Query: 15 PGMFAQMXXXXXXXXXXSAIGHTVGAALTGGMSDGSNSDXXXXXXXXXXP-SYGYSSLNQ 191
PG+ QM SA+GH VG TGG S + P + GYS
Sbjct: 61 PGLMKQMAATAGGVAIGSAVGHAVGGMFTGGGSSHAEQAPAAAAAPAGAPQASGYSQ--- 117
Query: 192 PNPCQNNINELLRCTQNESDISLCMGFSEALKDCKRFY 305
PC+ + + C QN+SD+SLC GF++ K CK Y
Sbjct: 118 --PCEFEWRQFVDCAQNQSDVSLCNGFNDIFKQCKARY 153
>sp|Q03667|YMO2_YEAST Hypothetical 16.7 kDa protein in CDC5-MVP1 intergenic region
Length = 156
Score = 49.3 bits (116), Expect = 3e-06
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Frame = +3
Query: 3 QPKQPGMFAQMXXXXXXXXXXSAIGHTVGAALTGGMS-DGSNSDXXXXXXXXXXPSYGYS 179
Q +QPGMFAQM S IGHT+GA +TG S GS+S + G +
Sbjct: 49 QTRQPGMFAQMASTAAGVAVGSTIGHTLGAGITGMFSGSGSDSAPVEQQQQNMANTSGQT 108
Query: 180 SLNQP--NPCQNNINELLRC-TQNESDISLCMGFSEALKDCK 296
+Q C+ + RC +N + +C + + LK C+
Sbjct: 109 QTDQQLGRTCEIDARNFTRCLDENNGNFQICDYYLQQLKACQ 150
>sp|Q10307|YD52_SCHPO Hypothetical protein C6C3.02c in chromosome I
Length = 172
Score = 42.4 bits (98), Expect = 4e-04
Identities = 33/116 (28%), Positives = 43/116 (37%), Gaps = 19/116 (16%)
Frame = +3
Query: 15 PGMFAQMXXXXXXXXXXSAIGHTVGAALTGGMSDGSNSDXXXXXXXXXXPSYGYS----- 179
PG F + SAIGHTVG+ +TGG S GS S+ SY S
Sbjct: 55 PGFFGNLVSTAAGVGIGSAIGHTVGSVITGGFS-GSGSNNAPADTSVPQSSYSNSVPEAA 113
Query: 180 --------------SLNQPNPCQNNINELLRCTQNESDISLCMGFSEALKDCKRFY 305
S N C+ + C NE + S C + E LK C+ +
Sbjct: 114 YGSAPPSTFASSAISEEAKNACKGDAKMFADCI-NEHEFSQCSYYLEQLKACQAMW 168
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,581,129
Number of Sequences: 369166
Number of extensions: 635939
Number of successful extensions: 1559
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1556
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2002648600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)