Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_C14
(229 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y6H1|CHCH2_HUMAN Coiled-coil-helix-coiled-coil-helix d... 40 0.002
sp|Q9D1L0|CHCH2_MOUSE Coiled-coil-helix-coiled-coil-helix d... 37 0.018
sp|Q03667|YMO2_YEAST Hypothetical 16.7 kDa protein in CDC5-... 37 0.018
sp|Q10307|YD52_SCHPO Hypothetical protein C6C3.02c in chrom... 33 0.20
>sp|Q9Y6H1|CHCH2_HUMAN Coiled-coil-helix-coiled-coil-helix domain containing protein 2
(HCV NS2 trans-regulated protein) (NS2TP)
Length = 151
Score = 40.0 bits (92), Expect = 0.002
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +2
Query: 104 GMFAQMXXXXXXXXXXSAIGHTVGAALTGGMSDGSNSD 217
G+ AQM SA+GHT+G A+TGG S GSN++
Sbjct: 54 GLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGSNAE 91
>sp|Q9D1L0|CHCH2_MOUSE Coiled-coil-helix-coiled-coil-helix domain containing protein 2
Length = 153
Score = 36.6 bits (83), Expect = 0.018
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2
Query: 104 GMFAQMXXXXXXXXXXSAIGHTVGAALTGGMSDGSNSD 217
G+ AQM SA+GHT+G A+TGG S G +++
Sbjct: 54 GLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGGSAE 91
>sp|Q03667|YMO2_YEAST Hypothetical 16.7 kDa protein in CDC5-MVP1 intergenic region
Length = 156
Score = 36.6 bits (83), Expect = 0.018
Identities = 20/38 (52%), Positives = 22/38 (57%)
Frame = +2
Query: 104 GMFAQMXXXXXXXXXXSAIGHTVGAALTGGMSDGSNSD 217
GMFAQM S IGHT+GA +T GM GS SD
Sbjct: 54 GMFAQMASTAAGVAVGSTIGHTLGAGIT-GMFSGSGSD 90
>sp|Q10307|YD52_SCHPO Hypothetical protein C6C3.02c in chromosome I
Length = 172
Score = 33.1 bits (74), Expect = 0.20
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 104 GMFAQMXXXXXXXXXXSAIGHTVGAALTGGMS-DGSNS 214
G F + SAIGHTVG+ +TGG S GSN+
Sbjct: 56 GFFGNLVSTAAGVGIGSAIGHTVGSVITGGFSGSGSNN 93
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,082,118
Number of Sequences: 369166
Number of extensions: 248552
Number of successful extensions: 719
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 68,354,980
effective HSP length: 47
effective length of database: 59,672,435
effective search space used: 1670828180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)