Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_J14
(536 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y6H1|CHCH2_HUMAN Coiled-coil-helix-coiled-coil-helix d... 78 1e-14
sp|Q9D1L0|CHCH2_MOUSE Coiled-coil-helix-coiled-coil-helix d... 71 1e-12
sp|Q09254|YQ5B_CAEEL Hypothetical protein C16C10.11 in chro... 59 1e-08
sp|Q03667|YMO2_YEAST Hypothetical 16.7 kDa protein in CDC5-... 42 7e-04
sp|Q10307|YD52_SCHPO Hypothetical protein C6C3.02c in chrom... 40 0.005
>sp|Q9Y6H1|CHCH2_HUMAN Coiled-coil-helix-coiled-coil-helix domain containing protein 2
(HCV NS2 trans-regulated protein) (NS2TP)
Length = 151
Score = 78.2 bits (191), Expect = 1e-14
Identities = 40/99 (40%), Positives = 51/99 (51%)
Frame = +1
Query: 97 GMFAQMXXXXXXXXXXSAIGHTVGAALTGGMSDGSNSDXXXXXXXXXXPSYGYSSLNQPN 276
G+ AQM SA+GHT+G A+TGG S GSN++ P G Q
Sbjct: 54 GLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQ-GTQPAQQQQ 112
Query: 277 PCQNNINELLRCTQNESDISLCMGFSEALKDCKRFYGLS 393
PC I + L C QN+ DI LC GF+E LK C+ GL+
Sbjct: 113 PCLYEIKQFLECAQNQGDIKLCEGFNEVLKQCRLANGLA 151
>sp|Q9D1L0|CHCH2_MOUSE Coiled-coil-helix-coiled-coil-helix domain containing protein 2
Length = 153
Score = 71.2 bits (173), Expect = 1e-12
Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Frame = +1
Query: 97 GMFAQMXXXXXXXXXXSAIGHTVGAALTGGMSDGSNSDXXXXXXXXXXPSYGYSSLNQPN 276
G+ AQM SA+GHT+G A+TGG S G +++ P G NQ +
Sbjct: 54 GLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGGSAEPAKPDITYQEPQ-GAQLQNQQS 112
Query: 277 --PCQNNINELLRCTQNESDISLCMGFSEALKDCKRFYGL 390
PC I + L C QN+SD+ LC GF+E L+ C+ GL
Sbjct: 113 FGPCSLEIKQFLECAQNQSDVKLCEGFNEVLRQCRIANGL 152
>sp|Q09254|YQ5B_CAEEL Hypothetical protein C16C10.11 in chromosome III
Length = 154
Score = 58.5 bits (140), Expect = 1e-08
Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Frame = +1
Query: 97 GMFAQMXXXXXXXXXXSAIGHTVGAALTGGMSDGSNSDXXXXXXXXXXP-SYGYSSLNQP 273
G+ QM SA+GH VG TGG S + P + GYS
Sbjct: 62 GLMKQMAATAGGVAIGSAVGHAVGGMFTGGGSSHAEQAPAAAAAPAGAPQASGYSQ---- 117
Query: 274 NPCQNNINELLRCTQNESDISLCMGFSEALKDCKRFY 384
PC+ + + C QN+SD+SLC GF++ K CK Y
Sbjct: 118 -PCEFEWRQFVDCAQNQSDVSLCNGFNDIFKQCKARY 153
>sp|Q03667|YMO2_YEAST Hypothetical 16.7 kDa protein in CDC5-MVP1 intergenic region
Length = 156
Score = 42.4 bits (98), Expect = 7e-04
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Frame = +1
Query: 97 GMFAQMXXXXXXXXXXSAIGHTVGAALTGGMS-DGSNSDXXXXXXXXXXPSYGYSSLNQP 273
GMFAQM S IGHT+GA +TG S GS+S + G + +Q
Sbjct: 54 GMFAQMASTAAGVAVGSTIGHTLGAGITGMFSGSGSDSAPVEQQQQNMANTSGQTQTDQQ 113
Query: 274 --NPCQNNINELLRC-TQNESDISLCMGFSEALKDCK 375
C+ + RC +N + +C + + LK C+
Sbjct: 114 LGRTCEIDARNFTRCLDENNGNFQICDYYLQQLKACQ 150
>sp|Q10307|YD52_SCHPO Hypothetical protein C6C3.02c in chromosome I
Length = 172
Score = 39.7 bits (91), Expect = 0.005
Identities = 32/115 (27%), Positives = 42/115 (36%), Gaps = 19/115 (16%)
Frame = +1
Query: 97 GMFAQMXXXXXXXXXXSAIGHTVGAALTGGMSDGSNSDXXXXXXXXXXPSYGYS------ 258
G F + SAIGHTVG+ +TGG S GS S+ SY S
Sbjct: 56 GFFGNLVSTAAGVGIGSAIGHTVGSVITGGFS-GSGSNNAPADTSVPQSSYSNSVPEAAY 114
Query: 259 -------------SLNQPNPCQNNINELLRCTQNESDISLCMGFSEALKDCKRFY 384
S N C+ + C NE + S C + E LK C+ +
Sbjct: 115 GSAPPSTFASSAISEEAKNACKGDAKMFADCI-NEHEFSQCSYYLEQLKACQAMW 168
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,597,494
Number of Sequences: 369166
Number of extensions: 776590
Number of successful extensions: 1915
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1912
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3699545625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)