Planaria EST Database

DrC_00892

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00892
         (736 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6NYA0|SFRS1_BRARE  Splicing factor, arginine/serine-rich 1     96   8e-20
sp|Q7SXP4|SF1L1_BRARE  Splicing factor, arginine/serine-rich...    96   8e-20
sp|Q9D0B0|SFRS9_MOUSE  Splicing factor, arginine/serine-rich 9     94   3e-19
sp|Q13242|SFRS9_HUMAN  Splicing factor, arginine/serine-rich...    94   4e-19
sp|Q6PDM2|SFRS1_MOUSE  Splicing factor, arginine/serine-rich...    93   8e-19
sp|Q5R7H2|SFRS1_PONPY  Splicing factor, arginine/serine-rich 1     93   8e-19
sp|Q9NEW6|RSP3_CAEEL  Probable splicing factor, arginine/ser...    88   3e-17
sp|O22315|SFRS1_ARATH  Pre-mRNA splicing factor SF2 (SR1 pro...    84   3e-16
sp|P26686|SRR55_DROME  Serine-arginine protein 55 (SRP55) (E...    62   2e-09
sp|Q08170|SFRS4_HUMAN  Splicing factor, arginine/serine-rich...    60   6e-09

>sp|Q6NYA0|SFRS1_BRARE Splicing factor, arginine/serine-rich 1
          Length = 245

 Score = 96.3 bits (238), Expect = 8e-20
 Identities = 40/75 (53%), Positives = 61/75 (81%)
 Frame = +1

Query: 16  FGTKSKSTEFRVRVSGLPQSASWQDLKDHMKAAGDVSYADVFRDGSGVCDYLNEDDLKYA 195
           +G  S+ +E+RV VSGLP S SWQDLKDHM+ AGDV YADVFRDG+GV +++ ++D+ YA
Sbjct: 111 YGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYA 170

Query: 196 LKTLDDSELKTYRGD 240
           ++ LD+++ +++ G+
Sbjct: 171 VRKLDNTKFRSHEGE 185

>sp|Q7SXP4|SF1L1_BRARE Splicing factor, arginine/serine-rich 1-like protein 1
          Length = 245

 Score = 96.3 bits (238), Expect = 8e-20
 Identities = 40/75 (53%), Positives = 61/75 (81%)
 Frame = +1

Query: 16  FGTKSKSTEFRVRVSGLPQSASWQDLKDHMKAAGDVSYADVFRDGSGVCDYLNEDDLKYA 195
           +G  S+ +E+RV VSGLP S SWQDLKDHM+ AGDV YADVFRDG+GV +++ ++D+ YA
Sbjct: 122 YGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYA 181

Query: 196 LKTLDDSELKTYRGD 240
           ++ LD+++ +++ G+
Sbjct: 182 VRKLDNTKFRSHEGE 196

>sp|Q9D0B0|SFRS9_MOUSE Splicing factor, arginine/serine-rich 9
          Length = 222

 Score = 94.4 bits (233), Expect = 3e-19
 Identities = 40/74 (54%), Positives = 59/74 (79%)
 Frame = +1

Query: 19  GTKSKSTEFRVRVSGLPQSASWQDLKDHMKAAGDVSYADVFRDGSGVCDYLNEDDLKYAL 198
           G  ++ ++FRV VSGLP S SWQDLKDHM+ AGDV YADV +DG G+ +YL ++D++YAL
Sbjct: 104 GPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYAL 163

Query: 199 KTLDDSELKTYRGD 240
           + LDD++ +++ G+
Sbjct: 164 RKLDDTKFRSHEGE 177

>sp|Q13242|SFRS9_HUMAN Splicing factor, arginine/serine-rich 9 (Pre-mRNA splicing factor
           SRp30C)
          Length = 221

 Score = 94.0 bits (232), Expect = 4e-19
 Identities = 40/74 (54%), Positives = 59/74 (79%)
 Frame = +1

Query: 19  GTKSKSTEFRVRVSGLPQSASWQDLKDHMKAAGDVSYADVFRDGSGVCDYLNEDDLKYAL 198
           G  ++ ++FRV VSGLP S SWQDLKDHM+ AGDV YADV +DG G+ +YL ++D++YAL
Sbjct: 103 GPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYAL 162

Query: 199 KTLDDSELKTYRGD 240
           + LDD++ +++ G+
Sbjct: 163 RKLDDTKFRSHEGE 176

>sp|Q6PDM2|SFRS1_MOUSE Splicing factor, arginine/serine-rich 1
 sp|Q07955|SFRS1_HUMAN Splicing factor, arginine/serine-rich 1 (pre-mRNA splicing factor
           SF2, P33 subunit) (Alternative splicing factor ASF-1)
          Length = 248

 Score = 92.8 bits (229), Expect = 8e-19
 Identities = 39/75 (52%), Positives = 60/75 (80%)
 Frame = +1

Query: 16  FGTKSKSTEFRVRVSGLPQSASWQDLKDHMKAAGDVSYADVFRDGSGVCDYLNEDDLKYA 195
           +G  S+ +E RV VSGLP S SWQDLKDHM+ AGDV YADV+RDG+GV +++ ++D+ YA
Sbjct: 112 YGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYA 171

Query: 196 LKTLDDSELKTYRGD 240
           ++ LD+++ +++ G+
Sbjct: 172 VRKLDNTKFRSHEGE 186

>sp|Q5R7H2|SFRS1_PONPY Splicing factor, arginine/serine-rich 1
          Length = 248

 Score = 92.8 bits (229), Expect = 8e-19
 Identities = 39/75 (52%), Positives = 60/75 (80%)
 Frame = +1

Query: 16  FGTKSKSTEFRVRVSGLPQSASWQDLKDHMKAAGDVSYADVFRDGSGVCDYLNEDDLKYA 195
           +G  S+ +E RV VSGLP S SWQDLKDHM+ AGDV YADV+RDG+GV +++ ++D+ YA
Sbjct: 112 YGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYA 171

Query: 196 LKTLDDSELKTYRGD 240
           ++ LD+++ +++ G+
Sbjct: 172 VRKLDNTKFRSHEGE 186

>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 (CeSF2)
           (CeSF2/ASF)
          Length = 258

 Score = 87.8 bits (216), Expect = 3e-17
 Identities = 38/74 (51%), Positives = 55/74 (74%)
 Frame = +1

Query: 19  GTKSKSTEFRVRVSGLPQSASWQDLKDHMKAAGDVSYADVFRDGSGVCDYLNEDDLKYAL 198
           G   + T +RV V GLP + SWQDLKDHM+ AGDV YADV RDG+GV ++   +D+KYA+
Sbjct: 115 GGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVKYAV 174

Query: 199 KTLDDSELKTYRGD 240
           + LDD++ +++ G+
Sbjct: 175 RKLDDTKFRSHEGE 188

>sp|O22315|SFRS1_ARATH Pre-mRNA splicing factor SF2 (SR1 protein)
          Length = 303

 Score = 84.3 bits (207), Expect = 3e-16
 Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 3/69 (4%)
 Frame = +1

Query: 28  SKSTEFRVRVSGLPQSASWQDLKDHMKAAGDVSYADVFRDG---SGVCDYLNEDDLKYAL 198
           S+ +EFRV V+GLP SASWQDLKDHM+  GDV ++ V+RD    +GV DY   +D+KYAL
Sbjct: 114 SRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYAL 173

Query: 199 KTLDDSELK 225
           K LDD+E +
Sbjct: 174 KKLDDTEFR 182

>sp|P26686|SRR55_DROME Serine-arginine protein 55 (SRP55) (Enhancer of deformed) (52-kDa
           bracketing protein) (B52 protein)
          Length = 376

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
 Frame = +1

Query: 37  TEFRVRVSGLPQSASWQDLKDHMKAAGDVSYADVF--RDGSGVCDYLNEDDLKYALKTLD 210
           TE+R+ V  L    SWQDLKD+M+ AG+V+YAD    R   GV ++ +  D+K A++ LD
Sbjct: 118 TEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLD 177

Query: 211 DSELKTYR 234
           D+EL   R
Sbjct: 178 DTELNGRR 185

>sp|Q08170|SFRS4_HUMAN Splicing factor, arginine/serine-rich 4 (Pre-mRNA splicing factor
           SRP75) (SRP001LB)
          Length = 494

 Score = 60.1 bits (144), Expect = 6e-09
 Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
 Frame = +1

Query: 37  TEFRVRVSGLPQSASWQDLKDHMKAAGDVSYADVF--RDGSGVCDYLNEDDLKYALKTLD 210
           TE+R+ V  L    SWQDLKD+M+ AG+V+YAD    R   GV ++++  D+K AL+ LD
Sbjct: 102 TEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLD 161

Query: 211 DSEL 222
            +E+
Sbjct: 162 GTEV 165

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,519,617
Number of Sequences: 369166
Number of extensions: 1349723
Number of successful extensions: 3608
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3603
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6582889600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00892

  1. Dr_sW_022_I20
  2. Dr_sW_008_L09
  3. Dr_sW_014_G16
  4. Dr_sW_008_A03
  5. Dr_sW_016_G03