Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_G16
(301 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9D0B0|SFRS9_MOUSE Splicing factor, arginine/serine-rich 9 32 0.34
sp|Q13242|SFRS9_HUMAN Splicing factor, arginine/serine-rich... 32 0.34
sp|O22315|SFRS1_ARATH Pre-mRNA splicing factor SF2 (SR1 pro... 31 0.99
sp|Q7X843|ATL3I_ARATH RING-H2 finger protein ATL3I (YGHL1-C... 30 2.2
sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/ser... 29 3.8
sp|Q8K9L3|MVIN_BUCAP Virulence factor mviN homolog 28 4.9
sp|P57415|MVIN_BUCAI Virulence factor mviN homolog 28 4.9
sp|Q10287|BGS1_SCHPO 1,3-beta-glucan synthase component bgs... 28 8.4
sp|O17956|SRD28_CAEEL Serpentine receptor class delta-28 (P... 28 8.4
sp|Q8VI47|MRP2_MOUSE Canalicular multispecific organic anio... 28 8.4
>sp|Q9D0B0|SFRS9_MOUSE Splicing factor, arginine/serine-rich 9
Length = 222
Score = 32.3 bits (72), Expect = 0.34
Identities = 10/26 (38%), Positives = 22/26 (84%)
Frame = +3
Query: 9 DYLNEDDLKYALKTLDDSELKTYRGD 86
+YL ++D++YAL+ LDD++ +++ G+
Sbjct: 152 EYLRKEDMEYALRKLDDTKFRSHEGE 177
>sp|Q13242|SFRS9_HUMAN Splicing factor, arginine/serine-rich 9 (Pre-mRNA splicing factor
SRp30C)
Length = 221
Score = 32.3 bits (72), Expect = 0.34
Identities = 10/26 (38%), Positives = 22/26 (84%)
Frame = +3
Query: 9 DYLNEDDLKYALKTLDDSELKTYRGD 86
+YL ++D++YAL+ LDD++ +++ G+
Sbjct: 151 EYLRKEDMEYALRKLDDTKFRSHEGE 176
>sp|O22315|SFRS1_ARATH Pre-mRNA splicing factor SF2 (SR1 protein)
Length = 303
Score = 30.8 bits (68), Expect = 0.99
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3
Query: 3 VCDYLNEDDLKYALKTLDDSELK 71
V DY +D+KYALK LDD+E +
Sbjct: 160 VVDYTCYEDMKYALKKLDDTEFR 182
>sp|Q7X843|ATL3I_ARATH RING-H2 finger protein ATL3I (YGHL1-C3HC4 RING fusion protein)
Length = 349
Score = 29.6 bits (65), Expect = 2.2
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Frame = -2
Query: 249 NSSLILMTMMNLCRFSSANSLVIVCIVLGIPTLTAIVTWIFYLLL-------NPFPIEFF 91
+SS +T+MN SS++ + ++C+V+ L + + YL+ FPI F
Sbjct: 97 SSSAATLTLMNQKDPSSSSIVSVLCLVISGLALIIVFLGVLYLIFKFLRKSSTLFPIPHF 156
Query: 90 QHLPD 76
+ PD
Sbjct: 157 NYNPD 161
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 (CeSF2)
(CeSF2/ASF)
Length = 258
Score = 28.9 bits (63), Expect = 3.8
Identities = 9/28 (32%), Positives = 21/28 (75%)
Frame = +3
Query: 3 VCDYLNEDDLKYALKTLDDSELKTYRGD 86
V ++ +D+KYA++ LDD++ +++ G+
Sbjct: 161 VVEFTRYEDVKYAVRKLDDTKFRSHEGE 188
>sp|Q8K9L3|MVIN_BUCAP Virulence factor mviN homolog
Length = 514
Score = 28.5 bits (62), Expect = 4.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 177 CIVLGIPTLTAIVTWIFYLLLNPFPIEFFQH 85
C + IP +I+T L+NPF I +FQH
Sbjct: 377 CQEVNIPMRISILTLFLTQLMNPFLIFYFQH 407
>sp|P57415|MVIN_BUCAI Virulence factor mviN homolog
Length = 511
Score = 28.5 bits (62), Expect = 4.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 195 NSLVIVCIVLGIPTLTAIVTWIFYLLLNPFPIEFFQH 85
+S C + IP ++ T + L+NPF I +FQH
Sbjct: 371 SSAFYACEEIKIPMKASLFTLLLNQLMNPFLIFYFQH 407
>sp|Q10287|BGS1_SCHPO 1,3-beta-glucan synthase component bgs1 (1,3-beta-D-glucan-UDP
glucosyltransferase)
Length = 1729
Score = 27.7 bits (60), Expect = 8.4
Identities = 14/64 (21%), Positives = 33/64 (51%)
Frame = -2
Query: 297 NNVLVIHELRFHPIIINSSLILMTMMNLCRFSSANSLVIVCIVLGIPTLTAIVTWIFYLL 118
NN++++ L+ ++I + + T++ +CR+ +SL G L ++ W+ +
Sbjct: 1178 NNMVIMFSLQLLMLVIINLGAMYTVVPVCRYRQFDSLTASLYPEGCYQLKPVLEWLKRCI 1237
Query: 117 LNPF 106
L+ F
Sbjct: 1238 LSIF 1241
>sp|O17956|SRD28_CAEEL Serpentine receptor class delta-28 (Protein srd-28)
Length = 320
Score = 27.7 bits (60), Expect = 8.4
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 246 SSLILMTMMNLCRFSSANSLVIVCIVLGIPTLTAIVTWI 130
SS I + R S SLV V I L IP+ + TWI
Sbjct: 104 SSYIFRYYILYVRDPSIKSLVFVAICLSIPSFIHMATWI 142
>sp|Q8VI47|MRP2_MOUSE Canalicular multispecific organic anion transporter 1 (ATP-binding
cassette sub-family C member 2)
Length = 1543
Score = 27.7 bits (60), Expect = 8.4
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = -2
Query: 225 MMNLCRFSSANSLVIVCIVLGIPTLTAIVTWIFYLLLN 112
+ NL RFS +++I + L PTL +++T+ Y+L++
Sbjct: 531 LRNLLRFSQLQTILIFILHL-TPTLVSVITFSVYVLVD 567
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,710,238
Number of Sequences: 369166
Number of extensions: 373929
Number of successful extensions: 1415
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1668247950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)