Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_G03
(549 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41595|5HT2B_HUMAN 5-hydroxytryptamine 2B receptor (5-HT... 30 5.1
sp|P32641|RAD24_YEAST Checkpoint protein RAD24 29 6.6
>sp|P41595|5HT2B_HUMAN 5-hydroxytryptamine 2B receptor (5-HT-2B) (Serotonin receptor 2B)
Length = 481
Score = 29.6 bits (65), Expect = 5.1
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -2
Query: 365 SAKPYFRNPLSENAKKLKK 309
S+K YFRNP++EN+K KK
Sbjct: 412 SSKIYFRNPMAENSKFFKK 430
>sp|P32641|RAD24_YEAST Checkpoint protein RAD24
Length = 659
Score = 29.3 bits (64), Expect = 6.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 342 PFVRKCQKIKEKILIFQLKN 283
P +RKCQ K+K +++ LKN
Sbjct: 489 PLIRKCQSYKKKYILYYLKN 508
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,626,983
Number of Sequences: 369166
Number of extensions: 1009729
Number of successful extensions: 2578
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2578
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3833118120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)