Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_A03
(482 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9D0B0|SFRS9_MOUSE Splicing factor, arginine/serine-rich 9 42 6e-04
sp|Q6NYA0|SFRS1_BRARE Splicing factor, arginine/serine-rich 1 42 6e-04
sp|Q7SXP4|SF1L1_BRARE Splicing factor, arginine/serine-rich... 42 6e-04
sp|Q13242|SFRS9_HUMAN Splicing factor, arginine/serine-rich... 42 7e-04
sp|Q6PDM2|SFRS1_MOUSE Splicing factor, arginine/serine-rich... 41 0.001
sp|Q5R7H2|SFRS1_PONPY Splicing factor, arginine/serine-rich 1 41 0.001
sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/ser... 41 0.001
sp|O22315|SFRS1_ARATH Pre-mRNA splicing factor SF2 (SR1 pro... 35 0.090
sp|P00417|COX3_DROME Cytochrome c oxidase subunit 3 (Cytoch... 31 1.3
sp|P00418|COX3_DROYA Cytochrome c oxidase subunit 3 (Cytoch... 31 1.3
>sp|Q9D0B0|SFRS9_MOUSE Splicing factor, arginine/serine-rich 9
Length = 222
Score = 42.4 bits (98), Expect = 6e-04
Identities = 15/36 (41%), Positives = 29/36 (80%)
Frame = +1
Query: 1 DVFRDGSGVCDYLNEDDLKYALKTLDDSELKTYRGD 108
DV +DG G+ +YL ++D++YAL+ LDD++ +++ G+
Sbjct: 142 DVQKDGMGMVEYLRKEDMEYALRKLDDTKFRSHEGE 177
>sp|Q6NYA0|SFRS1_BRARE Splicing factor, arginine/serine-rich 1
Length = 245
Score = 42.4 bits (98), Expect = 6e-04
Identities = 14/36 (38%), Positives = 30/36 (83%)
Frame = +1
Query: 1 DVFRDGSGVCDYLNEDDLKYALKTLDDSELKTYRGD 108
DVFRDG+GV +++ ++D+ YA++ LD+++ +++ G+
Sbjct: 150 DVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 185
>sp|Q7SXP4|SF1L1_BRARE Splicing factor, arginine/serine-rich 1-like protein 1
Length = 245
Score = 42.4 bits (98), Expect = 6e-04
Identities = 14/36 (38%), Positives = 30/36 (83%)
Frame = +1
Query: 1 DVFRDGSGVCDYLNEDDLKYALKTLDDSELKTYRGD 108
DVFRDG+GV +++ ++D+ YA++ LD+++ +++ G+
Sbjct: 161 DVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 196
>sp|Q13242|SFRS9_HUMAN Splicing factor, arginine/serine-rich 9 (Pre-mRNA splicing factor
SRp30C)
Length = 221
Score = 42.0 bits (97), Expect = 7e-04
Identities = 15/36 (41%), Positives = 29/36 (80%)
Frame = +1
Query: 1 DVFRDGSGVCDYLNEDDLKYALKTLDDSELKTYRGD 108
DV +DG G+ +YL ++D++YAL+ LDD++ +++ G+
Sbjct: 141 DVQKDGVGMVEYLRKEDMEYALRKLDDTKFRSHEGE 176
>sp|Q6PDM2|SFRS1_MOUSE Splicing factor, arginine/serine-rich 1
sp|Q07955|SFRS1_HUMAN Splicing factor, arginine/serine-rich 1 (pre-mRNA splicing factor
SF2, P33 subunit) (Alternative splicing factor ASF-1)
Length = 248
Score = 41.2 bits (95), Expect = 0.001
Identities = 13/36 (36%), Positives = 30/36 (83%)
Frame = +1
Query: 1 DVFRDGSGVCDYLNEDDLKYALKTLDDSELKTYRGD 108
DV+RDG+GV +++ ++D+ YA++ LD+++ +++ G+
Sbjct: 151 DVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 186
>sp|Q5R7H2|SFRS1_PONPY Splicing factor, arginine/serine-rich 1
Length = 248
Score = 41.2 bits (95), Expect = 0.001
Identities = 13/36 (36%), Positives = 30/36 (83%)
Frame = +1
Query: 1 DVFRDGSGVCDYLNEDDLKYALKTLDDSELKTYRGD 108
DV+RDG+GV +++ ++D+ YA++ LD+++ +++ G+
Sbjct: 151 DVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 186
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 (CeSF2)
(CeSF2/ASF)
Length = 258
Score = 41.2 bits (95), Expect = 0.001
Identities = 15/36 (41%), Positives = 28/36 (77%)
Frame = +1
Query: 1 DVFRDGSGVCDYLNEDDLKYALKTLDDSELKTYRGD 108
DV RDG+GV ++ +D+KYA++ LDD++ +++ G+
Sbjct: 153 DVARDGTGVVEFTRYEDVKYAVRKLDDTKFRSHEGE 188
>sp|O22315|SFRS1_ARATH Pre-mRNA splicing factor SF2 (SR1 protein)
Length = 303
Score = 35.0 bits (79), Expect = 0.090
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Frame = +1
Query: 4 VFRDG---SGVCDYLNEDDLKYALKTLDDSELK 93
V+RD +GV DY +D+KYALK LDD+E +
Sbjct: 150 VYRDARGTTGVVDYTCYEDMKYALKKLDDTEFR 182
>sp|P00417|COX3_DROME Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 262
Score = 31.2 bits (69), Expect = 1.3
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 257 DQARINNYR*LHNLNIRMNIGW*VLFFIGNEDLFFI--FWHF 376
D +R Y+ LH + + + W ++ FI +E LFF+ FW F
Sbjct: 61 DVSREGTYQGLHTYAVTIGLRWGMILFILSEVLFFVSFFWAF 102
>sp|P00418|COX3_DROYA Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 262
Score = 31.2 bits (69), Expect = 1.3
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 257 DQARINNYR*LHNLNIRMNIGW*VLFFIGNEDLFFI--FWHF 376
D +R Y+ LH + + + W ++ FI +E LFF+ FW F
Sbjct: 61 DVSREGTYQGLHTYAVTIGLRWGMILFILSEVLFFVSFFWAF 102
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,851,297
Number of Sequences: 369166
Number of extensions: 735484
Number of successful extensions: 2041
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2041
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2871696580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)