Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_I20
(505 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6NYA0|SFRS1_BRARE Splicing factor, arginine/serine-rich 1 96 4e-20
sp|Q7SXP4|SF1L1_BRARE Splicing factor, arginine/serine-rich... 96 4e-20
sp|Q9D0B0|SFRS9_MOUSE Splicing factor, arginine/serine-rich 9 94 1e-19
sp|Q13242|SFRS9_HUMAN Splicing factor, arginine/serine-rich... 94 2e-19
sp|Q6PDM2|SFRS1_MOUSE Splicing factor, arginine/serine-rich... 93 4e-19
sp|Q5R7H2|SFRS1_PONPY Splicing factor, arginine/serine-rich 1 93 4e-19
sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/ser... 88 1e-17
sp|O22315|SFRS1_ARATH Pre-mRNA splicing factor SF2 (SR1 pro... 84 1e-16
sp|P26686|SRR55_DROME Serine-arginine protein 55 (SRP55) (E... 62 8e-10
sp|Q08170|SFRS4_HUMAN Splicing factor, arginine/serine-rich... 60 3e-09
>sp|Q6NYA0|SFRS1_BRARE Splicing factor, arginine/serine-rich 1
Length = 245
Score = 96.3 bits (238), Expect = 4e-20
Identities = 40/75 (53%), Positives = 61/75 (81%)
Frame = +1
Query: 16 FGTKSKSTEFRVRVSGLPQSASWQDLKDHMKAAGDVSYADVFRDGSGVCDYLNEDDLKYA 195
+G S+ +E+RV VSGLP S SWQDLKDHM+ AGDV YADVFRDG+GV +++ ++D+ YA
Sbjct: 111 YGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYA 170
Query: 196 LKTLDDSELKTYRGD 240
++ LD+++ +++ G+
Sbjct: 171 VRKLDNTKFRSHEGE 185
>sp|Q7SXP4|SF1L1_BRARE Splicing factor, arginine/serine-rich 1-like protein 1
Length = 245
Score = 96.3 bits (238), Expect = 4e-20
Identities = 40/75 (53%), Positives = 61/75 (81%)
Frame = +1
Query: 16 FGTKSKSTEFRVRVSGLPQSASWQDLKDHMKAAGDVSYADVFRDGSGVCDYLNEDDLKYA 195
+G S+ +E+RV VSGLP S SWQDLKDHM+ AGDV YADVFRDG+GV +++ ++D+ YA
Sbjct: 122 YGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYA 181
Query: 196 LKTLDDSELKTYRGD 240
++ LD+++ +++ G+
Sbjct: 182 VRKLDNTKFRSHEGE 196
>sp|Q9D0B0|SFRS9_MOUSE Splicing factor, arginine/serine-rich 9
Length = 222
Score = 94.4 bits (233), Expect = 1e-19
Identities = 40/74 (54%), Positives = 59/74 (79%)
Frame = +1
Query: 19 GTKSKSTEFRVRVSGLPQSASWQDLKDHMKAAGDVSYADVFRDGSGVCDYLNEDDLKYAL 198
G ++ ++FRV VSGLP S SWQDLKDHM+ AGDV YADV +DG G+ +YL ++D++YAL
Sbjct: 104 GPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYAL 163
Query: 199 KTLDDSELKTYRGD 240
+ LDD++ +++ G+
Sbjct: 164 RKLDDTKFRSHEGE 177
>sp|Q13242|SFRS9_HUMAN Splicing factor, arginine/serine-rich 9 (Pre-mRNA splicing factor
SRp30C)
Length = 221
Score = 94.0 bits (232), Expect = 2e-19
Identities = 40/74 (54%), Positives = 59/74 (79%)
Frame = +1
Query: 19 GTKSKSTEFRVRVSGLPQSASWQDLKDHMKAAGDVSYADVFRDGSGVCDYLNEDDLKYAL 198
G ++ ++FRV VSGLP S SWQDLKDHM+ AGDV YADV +DG G+ +YL ++D++YAL
Sbjct: 103 GPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYAL 162
Query: 199 KTLDDSELKTYRGD 240
+ LDD++ +++ G+
Sbjct: 163 RKLDDTKFRSHEGE 176
>sp|Q6PDM2|SFRS1_MOUSE Splicing factor, arginine/serine-rich 1
sp|Q07955|SFRS1_HUMAN Splicing factor, arginine/serine-rich 1 (pre-mRNA splicing factor
SF2, P33 subunit) (Alternative splicing factor ASF-1)
Length = 248
Score = 92.8 bits (229), Expect = 4e-19
Identities = 39/75 (52%), Positives = 60/75 (80%)
Frame = +1
Query: 16 FGTKSKSTEFRVRVSGLPQSASWQDLKDHMKAAGDVSYADVFRDGSGVCDYLNEDDLKYA 195
+G S+ +E RV VSGLP S SWQDLKDHM+ AGDV YADV+RDG+GV +++ ++D+ YA
Sbjct: 112 YGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYA 171
Query: 196 LKTLDDSELKTYRGD 240
++ LD+++ +++ G+
Sbjct: 172 VRKLDNTKFRSHEGE 186
>sp|Q5R7H2|SFRS1_PONPY Splicing factor, arginine/serine-rich 1
Length = 248
Score = 92.8 bits (229), Expect = 4e-19
Identities = 39/75 (52%), Positives = 60/75 (80%)
Frame = +1
Query: 16 FGTKSKSTEFRVRVSGLPQSASWQDLKDHMKAAGDVSYADVFRDGSGVCDYLNEDDLKYA 195
+G S+ +E RV VSGLP S SWQDLKDHM+ AGDV YADV+RDG+GV +++ ++D+ YA
Sbjct: 112 YGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYA 171
Query: 196 LKTLDDSELKTYRGD 240
++ LD+++ +++ G+
Sbjct: 172 VRKLDNTKFRSHEGE 186
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 (CeSF2)
(CeSF2/ASF)
Length = 258
Score = 87.8 bits (216), Expect = 1e-17
Identities = 38/74 (51%), Positives = 55/74 (74%)
Frame = +1
Query: 19 GTKSKSTEFRVRVSGLPQSASWQDLKDHMKAAGDVSYADVFRDGSGVCDYLNEDDLKYAL 198
G + T +RV V GLP + SWQDLKDHM+ AGDV YADV RDG+GV ++ +D+KYA+
Sbjct: 115 GGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVKYAV 174
Query: 199 KTLDDSELKTYRGD 240
+ LDD++ +++ G+
Sbjct: 175 RKLDDTKFRSHEGE 188
>sp|O22315|SFRS1_ARATH Pre-mRNA splicing factor SF2 (SR1 protein)
Length = 303
Score = 84.3 bits (207), Expect = 1e-16
Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 3/69 (4%)
Frame = +1
Query: 28 SKSTEFRVRVSGLPQSASWQDLKDHMKAAGDVSYADVFRDG---SGVCDYLNEDDLKYAL 198
S+ +EFRV V+GLP SASWQDLKDHM+ GDV ++ V+RD +GV DY +D+KYAL
Sbjct: 114 SRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYAL 173
Query: 199 KTLDDSELK 225
K LDD+E +
Sbjct: 174 KKLDDTEFR 182
>sp|P26686|SRR55_DROME Serine-arginine protein 55 (SRP55) (Enhancer of deformed) (52-kDa
bracketing protein) (B52 protein)
Length = 376
Score = 62.0 bits (149), Expect = 8e-10
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Frame = +1
Query: 37 TEFRVRVSGLPQSASWQDLKDHMKAAGDVSYADVF--RDGSGVCDYLNEDDLKYALKTLD 210
TE+R+ V L SWQDLKD+M+ AG+V+YAD R GV ++ + D+K A++ LD
Sbjct: 118 TEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLD 177
Query: 211 DSELKTYR 234
D+EL R
Sbjct: 178 DTELNGRR 185
>sp|Q08170|SFRS4_HUMAN Splicing factor, arginine/serine-rich 4 (Pre-mRNA splicing factor
SRP75) (SRP001LB)
Length = 494
Score = 60.1 bits (144), Expect = 3e-09
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Frame = +1
Query: 37 TEFRVRVSGLPQSASWQDLKDHMKAAGDVSYADVF--RDGSGVCDYLNEDDLKYALKTLD 210
TE+R+ V L SWQDLKD+M+ AG+V+YAD R GV ++++ D+K AL+ LD
Sbjct: 102 TEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLD 161
Query: 211 DSEL 222
+E+
Sbjct: 162 GTEV 165
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,322,480
Number of Sequences: 369166
Number of extensions: 685972
Number of successful extensions: 2205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2200
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3218280650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)