Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_L09
(349 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9D0B0|SFRS9_MOUSE Splicing factor, arginine/serine-rich 9 32 0.35
sp|Q13242|SFRS9_HUMAN Splicing factor, arginine/serine-rich... 32 0.35
sp|O22315|SFRS1_ARATH Pre-mRNA splicing factor SF2 (SR1 pro... 31 1.0
sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/ser... 29 3.8
sp|Q8K9L3|MVIN_BUCAP Virulence factor mviN homolog 29 3.8
sp|P98188|C94A2_VICSA Cytochrome P450 94A2 (P450-dependent ... 28 5.0
sp|O81117|C94A1_VICSA Cytochrome P450 94A1 (P450-dependent ... 28 5.0
sp|Q7X843|ATL3I_ARATH RING-H2 finger protein ATL3I (YGHL1-C... 28 8.5
sp|P57415|MVIN_BUCAI Virulence factor mviN homolog 28 8.5
>sp|Q9D0B0|SFRS9_MOUSE Splicing factor, arginine/serine-rich 9
Length = 222
Score = 32.3 bits (72), Expect = 0.35
Identities = 10/26 (38%), Positives = 22/26 (84%)
Frame = +1
Query: 7 DYLNEDDLKYALKTLDDSELKTYRGD 84
+YL ++D++YAL+ LDD++ +++ G+
Sbjct: 152 EYLRKEDMEYALRKLDDTKFRSHEGE 177
>sp|Q13242|SFRS9_HUMAN Splicing factor, arginine/serine-rich 9 (Pre-mRNA splicing factor
SRp30C)
Length = 221
Score = 32.3 bits (72), Expect = 0.35
Identities = 10/26 (38%), Positives = 22/26 (84%)
Frame = +1
Query: 7 DYLNEDDLKYALKTLDDSELKTYRGD 84
+YL ++D++YAL+ LDD++ +++ G+
Sbjct: 151 EYLRKEDMEYALRKLDDTKFRSHEGE 176
>sp|O22315|SFRS1_ARATH Pre-mRNA splicing factor SF2 (SR1 protein)
Length = 303
Score = 30.8 bits (68), Expect = 1.0
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 1 VCDYLNEDDLKYALKTLDDSELK 69
V DY +D+KYALK LDD+E +
Sbjct: 160 VVDYTCYEDMKYALKKLDDTEFR 182
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 (CeSF2)
(CeSF2/ASF)
Length = 258
Score = 28.9 bits (63), Expect = 3.8
Identities = 9/28 (32%), Positives = 21/28 (75%)
Frame = +1
Query: 1 VCDYLNEDDLKYALKTLDDSELKTYRGD 84
V ++ +D+KYA++ LDD++ +++ G+
Sbjct: 161 VVEFTRYEDVKYAVRKLDDTKFRSHEGE 188
>sp|Q8K9L3|MVIN_BUCAP Virulence factor mviN homolog
Length = 514
Score = 28.9 bits (63), Expect = 3.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 190 SLVIDCIVLGIPTLTAIVTWIFYLLLNPFPIEFFQH 83
S C + IP +I+T L+NPF I +FQH
Sbjct: 372 SAFYSCQEVNIPMRISILTLFLTQLMNPFLIFYFQH 407
>sp|P98188|C94A2_VICSA Cytochrome P450 94A2 (P450-dependent fatty acid omega-hydroxylase)
Length = 513
Score = 28.5 bits (62), Expect = 5.0
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -1
Query: 202 SSANSLVIDCIVLGIPTLTAIVTWIFYLLLNPFPI--EFFQHLPDKS*VQNHQEFSKHIL 29
S +VI I+ G T +A +TW F+LL + E + + KS + E +
Sbjct: 301 SFVTDMVISIILAGRDTTSAALTWFFWLLSKHSHVENEILKEITGKSETVGYDEVKDMVY 360
Query: 28 DHLHL 14
H L
Sbjct: 361 THAAL 365
>sp|O81117|C94A1_VICSA Cytochrome P450 94A1 (P450-dependent fatty acid omega-hydroxylase)
Length = 514
Score = 28.5 bits (62), Expect = 5.0
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -1
Query: 187 LVIDCIVLGIPTLTAIVTWIFYLL-LNP-FPIEFFQHLPDKS*VQNHQEFSKHILDHLHL 14
+VI I+ G T +A +TW F+LL NP E L KS + + E + + H L
Sbjct: 308 IVISFILAGKDTTSAALTWFFWLLWKNPRVEEEIVNELSKKSELMVYDEVKEMVYTHAAL 367
Query: 13 N 11
+
Sbjct: 368 S 368
>sp|Q7X843|ATL3I_ARATH RING-H2 finger protein ATL3I (YGHL1-C3HC4 RING fusion protein)
Length = 349
Score = 27.7 bits (60), Expect = 8.5
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Frame = -1
Query: 247 NSSLILMTMMNLCRFSSANSLVIDCIVLGIPTLTAIVTWIFYLLL-------NPFPIEFF 89
+SS +T+MN SS++ + + C+V+ L + + YL+ FPI F
Sbjct: 97 SSSAATLTLMNQKDPSSSSIVSVLCLVISGLALIIVFLGVLYLIFKFLRKSSTLFPIPHF 156
Query: 88 QHLPD 74
+ PD
Sbjct: 157 NYNPD 161
>sp|P57415|MVIN_BUCAI Virulence factor mviN homolog
Length = 511
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 175 CIVLGIPTLTAIVTWIFYLLLNPFPIEFFQH 83
C + IP ++ T + L+NPF I +FQH
Sbjct: 377 CEEIKIPMKASLFTLLLNQLMNPFLIFYFQH 407
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,957,231
Number of Sequences: 369166
Number of extensions: 408466
Number of successful extensions: 1329
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 68,354,980
effective HSP length: 83
effective length of database: 53,021,975
effective search space used: 1696703200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)