Planarian EST Database

DrC_00759

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00759 TGAAAATTTATTTCAATGATGTCGTAATATTTATCACCAAGATATCATCTAATTTCACCA GAGAGGCTTTGACTAACATTTTAAAAGAAAATAAGTTATCTATAATCTCCATCAATTTAC CTGGGAAAATGAAAAAGAAAGGTTTGCAACTAAGAGGATATGGATTTGCCCGATTTGCTA AAATTGAGGATGCAAAGAAAGCTATCGACATTATAAATTCACACGAAATCGACGGTAAAA AGATGAAGGCAACTCCTTATGTTTGCAGGAAAATTTACAACGACATCAACAAAGTAAACT TCTCGAAATTGATCGCGCAAACCTTTGAAGATAAGGACATAACGGACGCGATTGCAAAAC ACTACAAAAGCGCCAAAGTCACCAAATACATGAATACGCAGTACGGATTGGAGTTCCCTT CAAAGGAGGAAGCTAATAAAATCTTCAACGAGGAAACTGTTACAATCGAGGGCAGCAAAT TGGTGTTTAACTATTTGTACGCGGAGAAGTCGAACCTGGTGCACGACGCTGCCGAAATCC CGGAAGTGGCTGTAAAGAGAGTTGCGGAACCAGAACCAATCGAGGCGAAAAAGGCTGAGA AAACCGTTAAAGCTGGAGTTAAAAGAAGCAATTGCGAATCCTCATCCGACGAGGAAGAAG AGGTCGTTAAGAAAACAAAGATGATCGATGGAACCGAATCTGCTAATAAAGTTGAAAAGA AAGTCGAAACACCGAAAAAATCGATTTCTGCTGTTAAAACTCCAGAGAAAAAGATTCCAA CTCCAAAAAATAACAAAGAAGGGAAGAAGGAAAACAAATCTCCTGCCAATGGAAAAGCGC ATTTTAACAAATCTCCATTGGATAAAAAACAATTCAATAAGCAATCGCCGGCTGGAAACA AAGGAAAGAATTCTCCTGGAAATAAGAAATTCAATAAAAAGTAATAATGTTCGTTACAGT GTAATGGAAATAAATGGGCATTTATT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00759
         (986 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P44731|POTD2_HAEIN  Spermidine/putrescine-binding peripla...    31   6.2  
sp|P38748|YHB0_YEAST  Hypothetical 67.5 kDa protein in PRPS4...    30   8.0  
sp|Q6CEW9|MRD1_YARLI  Multiple RNA-binding domain-containing...    30   8.0  
sp|O51773|SYI_BORBU  Isoleucyl-tRNA synthetase (Isoleucine--...    30   8.0

>sp|P44731|POTD2_HAEIN Spermidine/putrescine-binding periplasmic protein 2 precursor
           (SPBP)
          Length = 350

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +3

Query: 252 TPYVCRKIYNDINKVNFSKLIAQTFEDKDITDAIAKHYKSAKVTKYMNTQYGLEFPSKEE 431
           T YV   +    +K    ++I  TFE  +      + Y   K+T+   + Y L FPS   
Sbjct: 36  TDYVPSDLVAQFSKETGIEVIYSTFESNE------EMYAKLKLTQNTGSGYDLVFPSSYY 89

Query: 432 ANKIFNEETV-TIEGSKL 482
            NK+  E+ +  I+ SKL
Sbjct: 90  VNKMIKEKMLQPIDQSKL 107

>sp|P38748|YHB0_YEAST Hypothetical 67.5 kDa protein in PRPS4-STE20 intergenic region
          Length = 585

 Score = 30.4 bits (67), Expect = 8.0
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 13/68 (19%)
 Frame = +2

Query: 146 ATKRIWICPIC*N*GC-----KESYRHYKFT--------RNRR*KDEGNSLCLQENLQRH 286
           +T  +WIC IC N GC     K + +HY+ T        R +R  D      +   +Q  
Sbjct: 306 STDNLWICLICGNVGCGRYNSKHAIKHYEETLHCFAMDIRTQRVWDYAGDNYVHRLVQNE 365

Query: 287 QQSKLLEI 310
              KL+E+
Sbjct: 366 VDGKLVEV 373

>sp|Q6CEW9|MRD1_YARLI Multiple RNA-binding domain-containing protein 1
          Length = 828

 Score = 30.4 bits (67), Expect = 8.0
 Identities = 39/184 (21%), Positives = 71/184 (38%), Gaps = 21/184 (11%)
 Frame = +3

Query: 27   IFITKISSNFTREALTNILKE-NKLSIISINLPGKMKKKGLQLR-GYGFARFXXXXXXXX 200
            +F+  ++   T   LT+  K  +   +  + +    K KG  L  G+GF  F        
Sbjct: 607  VFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEAAEI 666

Query: 201  XXXXXNSHEIDGKKMKATPYVCRKIYN--------DINKVNFSKLIAQTFEDKDITDAIA 356
                 + H +DG K++       KI N        +  K   SK++ +    +     + 
Sbjct: 667  AQKAMDGHVLDGHKLQL------KISNRGQDEETTETKKAIDSKILIKNLPFEATKKDVQ 720

Query: 357  KHY------KSAKVTKYMNTQYG----LEFPSKEEANKIFNE-ETVTIEGSKLVFNYLYA 503
            K +      K+ +V K  N++       E+ S +EA    +  +   + G +LV  Y  A
Sbjct: 721  KLFGAFGSLKTVRVPKKFNSESRGFAFAEYVSAKEAEHAMSALQGTHLLGRRLVLQYAQA 780

Query: 504  EKSN 515
            + SN
Sbjct: 781  DASN 784

>sp|O51773|SYI_BORBU Isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase) (IleRS)
          Length = 1042

 Score = 30.4 bits (67), Expect = 8.0
 Identities = 31/91 (34%), Positives = 40/91 (43%)
 Frame = +3

Query: 234  GKKMKATPYVCRKIYNDINKVNFSKLIAQTFEDKDITDAIAKHYKSAKVTKYMNTQYGLE 413
            GK MKA      K+ N+    +  K+I  T    +I  A AKHY S            LE
Sbjct: 885  GKDMKAVSTEISKLKNE----DIIKIINGT--SYEIKVANAKHYLSLN-------DIILE 931

Query: 414  FPSKEEANKIFNEETVTIEGSKLVFNYLYAE 506
               KE   K+ NEE++TI    L+   LY E
Sbjct: 932  REEKENL-KVINEESITIGIDSLITKELYLE 961

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,538,325
Number of Sequences: 369166
Number of extensions: 1938570
Number of successful extensions: 5376
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5374
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10383318715
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00759

Planaria EST Database

DrC_00759

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail