Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_H02
(822 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P78559|MAP1A_HUMAN Microtubule-associated protein 1A (MA... 37 0.050
sp|P29548|TEBB_STYMY Telomere-binding protein beta subunit 35 0.25
sp|Q08864|H11_VOLCA Histone H1-I 35 0.33
sp|P15205|MAP1B_RAT Microtubule-associated protein 1B (MAP ... 32 1.6
sp|Q9QYR6|MAP1A_MOUSE Microtubule-associated protein 1A (MA... 32 2.1
sp|P14873|MAP1B_MOUSE Microtubule-associated protein 1B (MA... 32 2.1
sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89... 32 2.8
sp|Q83BD3|RBN_COXBU tRNA-processing ribonuclease BN (RNase BN) 31 3.6
sp|P41697|BUD6_YEAST Bud site selection protein BUD6 (Actin... 30 6.1
sp|P04769|PLFR_MOUSE Proliferin-related protein precursor (... 30 8.0
>sp|P78559|MAP1A_HUMAN Microtubule-associated protein 1A (MAP 1A) (Proliferation-related
protein p80) [Contains: MAP1 light chain LC2]
Length = 2805
Score = 37.4 bits (85), Expect = 0.050
Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 1/148 (0%)
Frame = +2
Query: 170 KDITD-ALAKHYKSAKVTKYMNTQYGLEFPSKEEANKIFNEETVTIEGSKMVLNYLYAEK 346
KD+ A+ + K +K+ + +++ L+ +K +K+ E V EG+K + L E
Sbjct: 297 KDLASGAVPTNLKPSKIKQRADSKESLKATTKTAVSKLAKREEVVEEGAKEARSELAKEL 356
Query: 347 SNLVHDAAEIPEVAVKRVAEPEQIEAKKAEKTVKAGVKRSNCXXXXXXXXXVVKKTKMID 526
+ A E E ++ A+PE+++ + +E +KA ++ + K
Sbjct: 357 AKTEKKAKESSEKPPEKPAKPERVKTESSE-ALKAEKRK-----------LIKDKVGKKH 404
Query: 527 GTESANKVEKKVETPKKSISAVKTPEKK 610
E +K+E+K + KK I + KK
Sbjct: 405 LKEKISKLEEKKDKEKKEIKKERKELKK 432
>sp|P29548|TEBB_STYMY Telomere-binding protein beta subunit
Length = 392
Score = 35.0 bits (79), Expect = 0.25
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 1/108 (0%)
Frame = +2
Query: 386 AVKRVAEPEQIEAKKAEKTVKAGVKRSNCXXXXXXXXXVVKKTKMIDGTESANKVEKKVE 565
A+KR+ + +Q+E+ + + V+ G K V K + + V+K V+
Sbjct: 227 ALKRIQD-QQVESVQVQPKVRGGAKGKKKAATKSATKKTVAAKKTAESADVRKSVDKIVK 285
Query: 566 -TPKKSISAVKTPEKKIPTPXXXXXXXXXXXSPANGKAHFNKSPLDKK 706
TP K S +TP+K P + + K N SP KK
Sbjct: 286 YTPNKPSSRKETPQKSQSAPAAGKSSAKRTTTGSKTKIPANPSPSGKK 333
>sp|Q08864|H11_VOLCA Histone H1-I
Length = 261
Score = 34.7 bits (78), Expect = 0.33
Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 1/173 (0%)
Frame = +2
Query: 95 YVCRKIYNDINKVNFSKLIAQTFEDKDITDALAKHYKSAKVTKYMNTQYGLEFPSKEEAN 274
++ K DI+ NF+K ++Q + L K S K+++ + + P K +A+
Sbjct: 87 FIENKYGKDIHDKNFAKTLSQVVKTFVKGGKLVKVKGSFKLSEALKAKAKKSTPKKAKAD 146
Query: 275 KIFNEETVTIEGSKM-VLNYLYAEKSNLVHDAAEIPEVAVKRVAEPEQIEAKKAEKTVKA 451
+ + K + A K + E E K+ A P+ + KKA A
Sbjct: 147 GEAKPKKSEAKPKKAEAVKKTKAPKEKVERPKKEKKEKVEKKKATPKAEKPKKAATPKSA 206
Query: 452 GVKRSNCXXXXXXXXXVVKKTKMIDGTESANKVEKKVETPKKSISAVKTPEKK 610
G K++ K K + + + K TP K + K P KK
Sbjct: 207 GKKKAT------------PKPKAAPKSPAKKDAKPKKATPSKKAAPKKAPAKK 247
Score = 32.3 bits (72), Expect = 1.6
Identities = 44/176 (25%), Positives = 67/176 (38%), Gaps = 6/176 (3%)
Frame = +2
Query: 221 KYMNTQYGLEFPSKEEANKIFNEETVTIEGSKMVLNYLYAEKSNLVHDAAEIPEVAVKRV 400
K++ +YG + K A + ++G K+V V + ++ E A+K
Sbjct: 86 KFIENKYGKDIHDKNFAKTLSQVVKTFVKGGKLVK----------VKGSFKLSE-ALK-- 132
Query: 401 AEPEQIEAKKAEKTVKAGVKRSNCXXXXXXXXXVVKKTKMIDGTESANKVEKKVETPKKS 580
A+ ++ KKA+ +A K+S VKKTK K EKK + KK
Sbjct: 133 AKAKKSTPKKAKADGEAKPKKSEAKPKKAE---AVKKTKAPKEKVERPKKEKKEKVEKKK 189
Query: 581 ISAVKTPEKKIPTP------XXXXXXXXXXXSPANGKAHFNKSPLDKKQFNKQSPA 730
+ KK TP SPA A K+ KK K++PA
Sbjct: 190 ATPKAEKPKKAATPKSAGKKKATPKPKAAPKSPAKKDAKPKKATPSKKAAPKKAPA 245
>sp|P15205|MAP1B_RAT Microtubule-associated protein 1B (MAP 1B) (Neuraxin) [Contains:
MAP1 light chain LC1]
Length = 2459
Score = 32.3 bits (72), Expect = 1.6
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 2/127 (1%)
Frame = +2
Query: 248 EFPSKEEANKIFNEETVTIEGSKMVLNYLYAEKSNLVHDAAEIPEVAVKRVAEPEQIEAK 427
E P +A+++ E+T +E + V+ + +K V + E V E ++A+
Sbjct: 563 EAPEATKASQV--EKTPKVESKEKVI--VKKDKPGKVESKPSVTEKEVPSKEEQSPVKAE 618
Query: 428 KAEKTVKAGVKRSNCXXXXXXXXXVVKKTKMIDGTESANKVEKKVETPKKSISAV--KTP 601
AEK + V K K++ EKK E PKK ++ KTP
Sbjct: 619 VAEKAATESKPK-------------VTKDKVVKKEIKTKPEEKKEEKPKKEVAKKEDKTP 665
Query: 602 EKKIPTP 622
KK P
Sbjct: 666 LKKDEKP 672
>sp|Q9QYR6|MAP1A_MOUSE Microtubule-associated protein 1A (MAP 1A)
Length = 1021
Score = 32.0 bits (71), Expect = 2.1
Identities = 31/142 (21%), Positives = 61/142 (42%)
Frame = +2
Query: 185 ALAKHYKSAKVTKYMNTQYGLEFPSKEEANKIFNEETVTIEGSKMVLNYLYAEKSNLVHD 364
A+ + K +K+ +++ L+ K +K+ E V EG+K + L E +
Sbjct: 527 AVPANLKPSKIKHRADSKESLKAAPKTAMSKLAKREEVLEEGAKEARSELAKELAKSEKK 586
Query: 365 AAEIPEVAVKRVAEPEQIEAKKAEKTVKAGVKRSNCXXXXXXXXXVVKKTKMIDGTESAN 544
A E E ++ ++PE++ + +E +KA ++ + K E +
Sbjct: 587 AKEPSEKPPEKPSKPERVRTESSE-ALKAEKRK-----------LIKDKVGKKHLKEKIS 634
Query: 545 KVEKKVETPKKSISAVKTPEKK 610
K+E+K + KK I + KK
Sbjct: 635 KLEEKRDKEKKEIKKERKELKK 656
>sp|P14873|MAP1B_MOUSE Microtubule-associated protein 1B (MAP 1B) (MAP1.2) (MAP1(X))
[Contains: MAP1 light chain LC1]
Length = 2464
Score = 32.0 bits (71), Expect = 2.1
Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 6/157 (3%)
Frame = +2
Query: 170 KDITDAL-AKHYKSAKVTKYMNTQYGLEFPSKEEANKIFNEETVTIEGSKMVLNYLYAEK 346
KD+T + K K+ + +++ L+ +K A+K +E+ E + V EK
Sbjct: 519 KDLTGQVPTPPVKQVKLKQRADSRESLKPATKPVASKSVRKESK--EETPEVTKTSQVEK 576
Query: 347 SNLVHDAAEI---PEVAVKRVAEPEQIEAKKAEKTVKAGVKRSNCXXXXXXXXXVVKKTK 517
+ V ++ + VK ++P E + + K ++ VK V K K
Sbjct: 577 TPKVESKEKVLVKKDKPVKTESKPSVTEKEVSSKEEQSPVKAEVAEKQATESKPKVTKDK 636
Query: 518 MIDGTESANKVEKKVETPKKSI--SAVKTPEKKIPTP 622
++ EKK E PKK + KTP KK P
Sbjct: 637 VVKKEIKTKLEEKKEEKPKKEVVKKEDKTPLKKDEKP 673
>sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 (Uncoordinated protein 89)
Length = 8081
Score = 31.6 bits (70), Expect = 2.8
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 8/130 (6%)
Frame = +2
Query: 257 SKEEANKIFNEETVTIEGSKMVLNYLYAEKSNLVHDAAEIPEVAVKRVAEPEQIEAKKAE 436
S + N + TIE ++ + + + H++ E +VK+ PE+++ K
Sbjct: 1489 SPDATNIVEVSSETTIEKTETTMT------TEMTHESEE-SRTSVKKEKTPEKVDEKPKS 1541
Query: 437 KTVKAGVKRSNCXXXXXXXXXVVKKTKMIDGTE----SANKVEKKVETP----KKSISAV 592
T K +S VKK K + E S K EK E P KKS + V
Sbjct: 1542 PTKK---DKSPEKSITEEIKSPVKKEKSPEKVEEKPASPTKKEKSPEKPASPTKKSENEV 1598
Query: 593 KTPEKKIPTP 622
K+P KK +P
Sbjct: 1599 KSPTKKEKSP 1608
>sp|Q83BD3|RBN_COXBU tRNA-processing ribonuclease BN (RNase BN)
Length = 278
Score = 31.2 bits (69), Expect = 3.6
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -3
Query: 790 RTLLLFIEFLISRRILPFVSSRRLLIELFFIQWRFVKMRFS---IGRRFVFLLPFFVIFW 620
R L F+ + + + PF+ +L+ F +Q V +G+ +F+LP+ +IF
Sbjct: 129 RLSLHFLIYFMVLLLSPFLLGAVMLLGTFLVQSPLVTDLIGWPYLGKGLLFVLPYVLIFI 188
Query: 619 SWNLFLW 599
++ LF W
Sbjct: 189 TFTLFNW 195
>sp|P41697|BUD6_YEAST Bud site selection protein BUD6 (Actin-interacting protein 3)
Length = 788
Score = 30.4 bits (67), Expect = 6.1
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 2/140 (1%)
Frame = +2
Query: 53 NSHEIDGKKMKATPYVCRKIYNDINKVNFSKLIAQTFEDKDITDALAK--HYKSAKVTKY 226
N H++ G+ K + I ++ K+ I ++ ++ I + L K ++KS
Sbjct: 492 NKHDLVGQNKKDDDKTIKDIQYELGKIKQVHNINRSNINETIFNILRKVDNFKS------ 545
Query: 227 MNTQYGLEFPSKEEANKIFNEETVTIEGSKMVLNYLYAEKSNLVHDAAEIPEVAVKRVAE 406
L F +K +N+++ E++ T G L + V D ++ E+ K VAE
Sbjct: 546 ------LSFSAKNSSNRMYMEKSQTELGD------LSDTLLSKVDDLQDVIEIMRKDVAE 593
Query: 407 PEQIEAKKAEKTVKAGVKRS 466
AKK +TV ++ +
Sbjct: 594 RRSQPAKKKLETVSKDLENA 613
>sp|P04769|PLFR_MOUSE Proliferin-related protein precursor (PRP)
Length = 244
Score = 30.0 bits (66), Expect = 8.0
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 4/132 (3%)
Frame = +2
Query: 53 NSHEIDGKKMKATPYVCRKIY-NDINKVNFSKLIAQTFEDKDITDALAKHYKSAKVTKYM 229
N+ + G+ K + ++ + N + F+K+I L H + +TK
Sbjct: 49 NATVLSGEMSKLGVIMRKEFFMNSFSSETFNKII------------LDLHKSTENITKAF 96
Query: 230 NTQYGLEFPSKEEANKIFNEETVTIEGSKMVLNYLYAEKSNLVHDAAEI---PEVAVKRV 400
N+ + + E + +T E KMVL+ L A K L H E+ PE + +
Sbjct: 97 NSCHTVPINVPETVEDV--RKTSFEEFLKMVLHMLLAWKEPLKHLVTELSALPECPYRIL 154
Query: 401 AEPEQIEAKKAE 436
++ E IEAK +
Sbjct: 155 SKAEAIEAKNKD 166
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,197,190
Number of Sequences: 369166
Number of extensions: 1613398
Number of successful extensions: 4970
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4963
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7907893860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)