Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_P09
(798 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q58868|METE_METJA Probable methylcobalamin:homocysteine ... 34 0.53
sp|O51773|SYI_BORBU Isoleucyl-tRNA synthetase (Isoleucine--... 30 5.8
sp|P24884|NU5M_ASCSU NADH-ubiquinone oxidoreductase chain 5... 30 7.6
sp|Q8NHU3|SMS2_HUMAN Phosphatidylcholine:ceramide cholineph... 30 9.9
>sp|Q58868|METE_METJA Probable methylcobalamin:homocysteine methyltransferase (Methionine
synthase)
Length = 308
Score = 33.9 bits (76), Expect = 0.53
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +2
Query: 5 AKKAIDIINSHEIDGKKMKAAPYVCRKIYNDINKVN 112
A+KAIDII +DG +K A +VC +YN I+++N
Sbjct: 174 ARKAIDII----VDGLNIKFAMHVCGNVYNIIDELN 205
>sp|O51773|SYI_BORBU Isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase) (IleRS)
Length = 1042
Score = 30.4 bits (67), Expect = 5.8
Identities = 31/91 (34%), Positives = 40/91 (43%)
Frame = +2
Query: 47 GKKMKAAPYVCRKIYNDINKVNFSKLIAQTFEDKDITDAIAKHYKSAKVTKYMNTQYGLE 226
GK MKA K+ N+ + K+I T +I A AKHY S LE
Sbjct: 885 GKDMKAVSTEISKLKNE----DIIKIINGT--SYEIKVANAKHYLSLN-------DIILE 931
Query: 227 FPSKEEANKIFNEETVTIEGSKLVFNYLYAE 319
KE K+ NEE++TI L+ LY E
Sbjct: 932 REEKENL-KVINEESITIGIDSLITKELYLE 961
>sp|P24884|NU5M_ASCSU NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 547
Score = 30.0 bits (66), Expect = 7.6
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = -3
Query: 760 LLLFIEFLISRRILSFVSSRRLLIELFFIQWRFVKMRFSI 641
L++F+ F +S ++ FVS +L FF++W F+ + S+
Sbjct: 7 LMVFLLFCVSLFLIFFVSCVKL--SFFFVEWDFLSFKISV 44
>sp|Q8NHU3|SMS2_HUMAN Phosphatidylcholine:ceramide cholinephosphotransferase 2
(Sphingomyelin synthase 2)
Length = 365
Score = 29.6 bits (65), Expect = 9.9
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -3
Query: 697 LLIELFFIQWRFVKMRFSIGRRFVFLL 617
+L+ L+ QW F++ + +GRRF F++
Sbjct: 137 ILVGLWITQWLFLRYKSIVGRRFCFII 163
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,337,625
Number of Sequences: 369166
Number of extensions: 1490310
Number of successful extensions: 4454
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4450
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7522142940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)